Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   LIO34_RS05050 Genome accession   NZ_CP085085
Coordinates   991779..992444 (-) Length   221 a.a.
NCBI ID   WP_009909826.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA8     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 986779..997444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO34_RS05025 - 987052..987363 (+) 312 Protein_939 DUF3307 domain-containing protein -
  LIO34_RS05030 - 987429..987950 (+) 522 WP_002935005.1 AAA family ATPase -
  LIO34_RS05035 xerS 988117..989187 (+) 1071 WP_002935006.1 tyrosine recombinase XerS Machinery gene
  LIO34_RS05040 - 989257..990765 (-) 1509 WP_013730362.1 phosphoglucomutase -
  LIO34_RS05045 - 990841..991782 (-) 942 WP_002935009.1 sensor histidine kinase -
  LIO34_RS05050 braR 991779..992444 (-) 666 WP_009909826.1 response regulator transcription factor Regulator
  LIO34_RS05055 - 992483..992689 (-) 207 WP_370287028.1 type II toxin-antitoxin system RelE/ParE family toxin -
  LIO34_RS05060 relB 992730..992969 (-) 240 WP_002935014.1 type II toxin-antitoxin system RelB family antitoxin -
  LIO34_RS05065 - 993061..995031 (-) 1971 WP_013730363.1 FtsX-like permease family protein -
  LIO34_RS05070 - 995032..995784 (-) 753 WP_002935019.1 ABC transporter ATP-binding protein -
  LIO34_RS05075 - 995801..996184 (-) 384 WP_002935021.1 NisI/SpaI family lantibiotic immunity lipoprotein -
  LIO34_RS05080 - 996197..996337 (-) 141 WP_002935023.1 hypothetical protein -
  LIO34_RS05085 - 996436..997170 (-) 735 WP_002935025.1 TraX family protein -
  LIO34_RS05090 - 997183..997320 (-) 138 WP_002935027.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25459.28 Da        Isoelectric Point: 4.7792

>NTDB_id=537116 LIO34_RS05050 WP_009909826.1 991779..992444(-) (braR) [Streptococcus suis strain Ssuis_MA8]
MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDISLPYYNGFYWTTEIRKTMTMPIIFIS
SSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFSNELEQVQLSPTETKILS
ALLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGYLVK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=537116 LIO34_RS05050 WP_009909826.1 991779..992444(-) (braR) [Streptococcus suis strain Ssuis_MA8]
ATGAAAAAAGAGAAGATTTATATTGTTGAAGATGATGAGATGATTGTCCAGCTCTTGAAGCAGCATTTGGGAAAATCGTA
TCAGGTGGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTCGCTGAAATCAAACCAGACTTGGTGCTGATGGACA
TTAGCCTGCCTTATTACAACGGTTTTTACTGGACGACAGAAATCCGTAAAACCATGACCATGCCCATTATCTTTATCTCC
TCTAGCGATGATGAGATGAATGCGGTCATGGCCATGAACATGGGTGGCGATGATTTTGTGTCTAAGCCGTTTTCTCTGGG
GATTTTGGATGCCAAAATCGGCGCCTTCTTGCGTCGGGTTAATCAATTCAGCAAATCAACTGATTTGTCAATTGACCAGT
TCCAACTTAGTTTAGACGGGCGATTTTCAAACGAATTGGAACAGGTTCAATTGTCTCCTACGGAAACCAAGATTTTGTCC
GCCTTACTAGAAAGACAAGGGCAGATTGTCAGCAAGGAAGAACTCCTGGAAAAACTCTGGGAAAATGAAGAATTTATTGA
CCAGAACACGCTCAATGTCAACATGACCAGACTGCGTAAGAAGGTGAGCGAAGTCGGGTTTGAACGAATTCATACGGTTC
GTGGCGTGGGGTACTTGGTCAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-219)

Response regulator receiver domain (Response_reg)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.273

99.548

0.471