Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   IUB69_RS13250 Genome accession   NZ_ABACVG020000001
Coordinates   2762667..2763692 (-) Length   341 a.a.
NCBI ID   WP_032185633.1    Uniprot ID   -
Organism   Escherichia coli strain 2020CK-00188     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2757667..2768692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUB69_RS13225 (IUB69_013185) rraA 2758093..2758578 (-) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  IUB69_RS13230 (IUB69_013190) menA 2758671..2759597 (-) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  IUB69_RS13235 (IUB69_013195) hslU 2759664..2760995 (-) 1332 WP_001293344.1 HslU--HslV peptidase ATPase subunit -
  IUB69_RS13240 (IUB69_013200) hslV 2761005..2761535 (-) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  IUB69_RS13245 (IUB69_013205) ftsN 2761628..2762575 (-) 948 WP_032185631.1 cell division protein FtsN -
  IUB69_RS13250 (IUB69_013210) cytR 2762667..2763692 (-) 1026 WP_032185633.1 DNA-binding transcriptional regulator CytR Regulator
  IUB69_RS13255 (IUB69_013215) priA 2763848..2766046 (-) 2199 WP_032185635.1 primosomal protein N' Machinery gene
  IUB69_RS13260 (IUB69_013220) rpmE 2766249..2766461 (+) 213 WP_000710769.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37747.67 Da        Isoelectric Point: 6.3831

>NTDB_id=53695 IUB69_RS13250 WP_032185633.1 2762667..2763692(-) (cytR) [Escherichia coli strain 2020CK-00188]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFSFEAGSNAMQQLL
ALPQPPTAVFCHSDVMALGALSQAKRQGLKIPDDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=53695 IUB69_RS13250 WP_032185633.1 2762667..2763692(-) (cytR) [Escherichia coli strain 2020CK-00188]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTAGGTTATT
TGCCGCAGCCTATGGGGCGCAACGTCAAACGTAATGAATCCCGCACCATTCTGGTGATTGTTCCTGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATTATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCGCCGGAACTGGAG
CTGCCTACAGTTCATATCGACAATTTGACCGCGGCATTTGATGCAGTAAATTATTTATATGAGCAAGGTCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGGGGCGACTTCTCCTTTGAAGCCGGAAGCAACGCGATGCAACAGCTGCTT
GCTCTTCCGCAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTAATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAATCCCGGATGATCTGTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

63.881

98.24

0.628
  cytR Vibrio cholerae C6706

64.832

95.894

0.622

Multiple sequence alignment