Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | I6K98_RS17425 | Genome accession | NZ_CP069820 |
| Coordinates | 3649924..3650985 (+) | Length | 353 a.a. |
| NCBI ID | WP_003812760.1 | Uniprot ID | K0MEU1 |
| Organism | Bordetella pertussis strain FDAARGOS_1368 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3604470..3651584 | 3649924..3650985 | within | 0 |
Gene organization within MGE regions
Location: 3604470..3651584
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K98_RS17170 (I6K98_17170) | - | 3604470..3605429 (+) | 960 | WP_010931016.1 | ABC transporter permease | - |
| I6K98_RS17175 (I6K98_17175) | - | 3605458..3606261 (+) | 804 | WP_010931015.1 | ABC transporter permease | - |
| I6K98_RS17180 (I6K98_17180) | - | 3606263..3607897 (+) | 1635 | WP_010931014.1 | dipeptide ABC transporter ATP-binding protein | - |
| I6K98_RS17185 (I6K98_17185) | - | 3607981..3609042 (+) | 1062 | WP_010931013.1 | LacI family DNA-binding transcriptional regulator | - |
| I6K98_RS17190 (I6K98_17190) | - | 3609241..3609510 (+) | 270 | WP_004567322.1 | hypothetical protein | - |
| I6K98_RS17195 (I6K98_17195) | - | 3609514..3610038 (+) | 525 | WP_010931012.1 | helix-turn-helix transcriptional regulator | - |
| I6K98_RS17200 (I6K98_17200) | - | 3610047..3610379 (-) | 333 | WP_224019493.1 | MerR family DNA-binding protein | - |
| I6K98_RS17205 (I6K98_17205) | - | 3610454..3611404 (+) | 951 | WP_010929591.1 | IS481-like element IS481 family transposase | - |
| I6K98_RS17210 (I6K98_17210) | - | 3611401..3612435 (-) | 1035 | WP_010931011.1 | metal-dependent hydrolase | - |
| I6K98_RS17215 (I6K98_17215) | - | 3612544..3613182 (+) | 639 | WP_003816758.1 | DedA family protein | - |
| I6K98_RS17220 (I6K98_17220) | - | 3613477..3613704 (+) | 228 | WP_019247724.1 | GNAT family N-acetyltransferase | - |
| I6K98_RS17225 (I6K98_17225) | - | 3613827..3614540 (+) | 714 | WP_003820420.1 | class I SAM-dependent methyltransferase | - |
| I6K98_RS17230 (I6K98_17230) | - | 3614785..3615735 (-) | 951 | WP_005013747.1 | IS481-like element IS481 family transposase | - |
| I6K98_RS17235 (I6K98_17235) | - | 3615839..3616120 (+) | 282 | WP_010931009.1 | hypothetical protein | - |
| I6K98_RS17240 (I6K98_17240) | - | 3616235..3617683 (-) | 1449 | WP_010931008.1 | PLP-dependent aminotransferase family protein | - |
| I6K98_RS17245 (I6K98_17245) | - | 3617794..3618744 (+) | 951 | WP_010929584.1 | IS481-like element IS481 family transposase | - |
| I6K98_RS17250 (I6K98_17250) | dut | 3618741..3619190 (-) | 450 | WP_003816756.1 | dUTP diphosphatase | - |
| I6K98_RS17255 (I6K98_17255) | - | 3619385..3620335 (+) | 951 | WP_010929584.1 | IS481-like element IS481 family transposase | - |
| I6K98_RS17260 (I6K98_17260) | rpmI | 3620671..3620868 (+) | 198 | WP_003812834.1 | 50S ribosomal protein L35 | - |
| I6K98_RS17265 (I6K98_17265) | rplT | 3620884..3621243 (+) | 360 | WP_003812832.1 | 50S ribosomal protein L20 | - |
| I6K98_RS17270 (I6K98_17270) | pheS | 3621318..3622340 (+) | 1023 | WP_010926359.1 | phenylalanine--tRNA ligase subunit alpha | - |
| I6K98_RS17275 (I6K98_17275) | pheT | 3622353..3624770 (+) | 2418 | WP_010931007.1 | phenylalanine--tRNA ligase subunit beta | - |
| I6K98_RS17280 (I6K98_17280) | - | 3624776..3625117 (+) | 342 | WP_010931006.1 | integration host factor subunit alpha | - |
| I6K98_RS17285 (I6K98_17285) | - | 3625176..3625586 (+) | 411 | WP_003812822.1 | MerR family transcriptional regulator | - |
| I6K98_RS17295 (I6K98_17295) | - | 3626086..3627177 (-) | 1092 | WP_010931005.1 | hypothetical protein | - |
| I6K98_RS17300 (I6K98_17300) | - | 3627361..3627957 (+) | 597 | WP_010931004.1 | lipoprotein | - |
| I6K98_RS17305 (I6K98_17305) | - | 3628057..3628239 (-) | 183 | WP_004567479.1 | hypothetical protein | - |
| I6K98_RS17310 (I6K98_17310) | - | 3628350..3629300 (+) | 951 | WP_010929591.1 | IS481-like element IS481 family transposase | - |
| I6K98_RS17320 (I6K98_17320) | - | 3630038..3630370 (+) | 333 | WP_023853503.1 | hypothetical protein | - |
| I6K98_RS17325 (I6K98_17325) | - | 3630512..3631252 (-) | 741 | WP_023853497.1 | endonuclease | - |
| I6K98_RS17330 (I6K98_17330) | - | 3631428..3631559 (+) | 132 | WP_003812797.1 | entericidin A/B family lipoprotein | - |
| I6K98_RS17335 (I6K98_17335) | - | 3631685..3632119 (+) | 435 | WP_010931001.1 | BPTD_2524 family lipoprotein | - |
| I6K98_RS17340 (I6K98_17340) | - | 3632121..3632534 (+) | 414 | WP_003820436.1 | membrane protein | - |
| I6K98_RS17345 (I6K98_17345) | - | 3632641..3633936 (+) | 1296 | WP_010926366.1 | aspartate carbamoyltransferase | - |
| I6K98_RS17350 (I6K98_17350) | - | 3633976..3634875 (-) | 900 | WP_003812788.1 | recombination-associated protein RdgC | - |
| I6K98_RS20205 | - | 3635029..3635244 (+) | 216 | Protein_3430 | hypothetical protein | - |
| I6K98_RS17360 (I6K98_17360) | - | 3635497..3636804 (-) | 1308 | WP_023994674.1 | CaiB/BaiF CoA transferase family protein | - |
| I6K98_RS17365 (I6K98_17365) | - | 3636821..3637708 (-) | 888 | WP_010930998.1 | LysR substrate-binding domain-containing protein | - |
| I6K98_RS17370 (I6K98_17370) | - | 3637924..3639087 (+) | 1164 | WP_010930997.1 | thiolase C-terminal domain-containing protein | - |
| I6K98_RS17375 (I6K98_17375) | - | 3639095..3639487 (+) | 393 | WP_010930996.1 | Zn-ribbon domain-containing OB-fold protein | - |
| I6K98_RS17380 (I6K98_17380) | - | 3639488..3639931 (+) | 444 | WP_003820449.1 | MaoC/PaaZ C-terminal domain-containing protein | - |
| I6K98_RS17385 (I6K98_17385) | - | 3639932..3640678 (+) | 747 | WP_010930995.1 | SDR family oxidoreductase | - |
| I6K98_RS17390 (I6K98_17390) | - | 3640716..3641753 (+) | 1038 | WP_004567469.1 | ABC transporter substrate-binding protein | - |
| I6K98_RS17395 (I6K98_17395) | - | 3641782..3643533 (+) | 1752 | WP_010930994.1 | ABC transporter permease | - |
| I6K98_RS17400 (I6K98_17400) | - | 3643530..3644594 (+) | 1065 | WP_010930993.1 | ABC transporter ATP-binding protein | - |
| I6K98_RS17405 (I6K98_17405) | - | 3644622..3645398 (+) | 777 | WP_015041674.1 | enoyl-CoA hydratase/isomerase family protein | - |
| I6K98_RS17410 (I6K98_17410) | - | 3645650..3647326 (-) | 1677 | WP_003820458.1 | MFS transporter | - |
| I6K98_RS17415 (I6K98_17415) | - | 3647521..3648879 (-) | 1359 | WP_010930991.1 | sensor histidine kinase | - |
| I6K98_RS17420 (I6K98_17420) | - | 3648995..3649684 (-) | 690 | WP_003812762.1 | response regulator transcription factor | - |
| I6K98_RS17425 (I6K98_17425) | recA | 3649924..3650985 (+) | 1062 | WP_003812760.1 | recombinase RecA | Machinery gene |
| I6K98_RS17430 (I6K98_17430) | recX | 3651018..3651584 (+) | 567 | WP_010930990.1 | recombination regulator RecX | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37949.30 Da Isoelectric Point: 5.1842
>NTDB_id=536909 I6K98_RS17425 WP_003812760.1 3649924..3650985(+) (recA) [Bordetella pertussis strain FDAARGOS_1368]
MDDKTSKAAAAEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK
TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH
KEMAIEIENKVRENQGIVSRAATFPASEAEDGE
MDDKTSKAAAAEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK
TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH
KEMAIEIENKVRENQGIVSRAATFPASEAEDGE
Nucleotide
Download Length: 1062 bp
>NTDB_id=536909 I6K98_RS17425 WP_003812760.1 3649924..3650985(+) (recA) [Bordetella pertussis strain FDAARGOS_1368]
ATGGACGACAAAACCAGCAAGGCCGCCGCGGCCGAGAAAGCCAAGGCGCTGGCCGCCGCGCTGTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTATGGCGACAACGAGGTCGAACACGACATCCAGGTCGTGTCCACCGGTTCGCTGG
GGCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGATCGAGGTCTACGGCCCCGAGTCGTCCGGCAAG
ACCACGCTCACGCTGCAGGTCATCGCCGAAATGCAGAAGCTGGGCGGCACCTGCGCCTTCGTCGACGCCGAACACGCGCT
GGACGTGCAATACGCCTCCAAGCTGGGGGTCAACCTGACCGACCTGCTGATCTCCCAGCCGGACACGGGCGAGCAGGCCC
TCGAGATCACCGACGCGCTGGTGCGCTCGGGCTCGGTCGACCTGATCGTCATCGACTCGGTCGCGGCGCTGGTGCCCAAG
GCCGAAATCGAAGGCGAGATGGGCGACTCCCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGAC
GGCCACCATCAAGCGCACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACC
CCGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTATTCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCCATCAAG
AAGGGCGACGAGGTGGTCGGCAACGAAACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAGGCCGA
GTTCGACATCATGTATGGCAGCGGCATCTCGCGCGAAGGCGAAATCATCGACCTGGGCGTGCAAGCCAATGTGGTCGACA
AGTCCGGCGCCTGGTACAGCTACAGCGGCAACCGCATCGGCCAGGGCAAGGACAATGTGCGCGAGTACCTGAAAGAGCAC
AAGGAAATGGCCATCGAGATCGAAAACAAGGTGCGCGAGAACCAGGGCATAGTCAGCCGCGCCGCCACCTTTCCGGCCAG
CGAAGCCGAAGACGGCGAATAA
ATGGACGACAAAACCAGCAAGGCCGCCGCGGCCGAGAAAGCCAAGGCGCTGGCCGCCGCGCTGTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTATGGCGACAACGAGGTCGAACACGACATCCAGGTCGTGTCCACCGGTTCGCTGG
GGCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGATCGAGGTCTACGGCCCCGAGTCGTCCGGCAAG
ACCACGCTCACGCTGCAGGTCATCGCCGAAATGCAGAAGCTGGGCGGCACCTGCGCCTTCGTCGACGCCGAACACGCGCT
GGACGTGCAATACGCCTCCAAGCTGGGGGTCAACCTGACCGACCTGCTGATCTCCCAGCCGGACACGGGCGAGCAGGCCC
TCGAGATCACCGACGCGCTGGTGCGCTCGGGCTCGGTCGACCTGATCGTCATCGACTCGGTCGCGGCGCTGGTGCCCAAG
GCCGAAATCGAAGGCGAGATGGGCGACTCCCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGAC
GGCCACCATCAAGCGCACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACC
CCGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTATTCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCCATCAAG
AAGGGCGACGAGGTGGTCGGCAACGAAACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAGGCCGA
GTTCGACATCATGTATGGCAGCGGCATCTCGCGCGAAGGCGAAATCATCGACCTGGGCGTGCAAGCCAATGTGGTCGACA
AGTCCGGCGCCTGGTACAGCTACAGCGGCAACCGCATCGGCCAGGGCAAGGACAATGTGCGCGAGTACCTGAAAGAGCAC
AAGGAAATGGCCATCGAGATCGAAAACAAGGTGCGCGAGAACCAGGGCATAGTCAGCCGCGCCGCCACCTTTCCGGCCAG
CGAAGCCGAAGACGGCGAATAA
Similar proteins
Only experimentally validated proteins are listed.