Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JS513_RS10810 Genome accession   NZ_CP069799
Coordinates   2163061..2163456 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 014S_SA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2158061..2168456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS513_RS10785 (JS513_10785) thiE 2158661..2159302 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  JS513_RS10790 (JS513_10790) thiM 2159304..2160095 (-) 792 WP_001108489.1 hydroxyethylthiazole kinase -
  JS513_RS10795 (JS513_10795) thiD 2160079..2160909 (-) 831 WP_000594967.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  JS513_RS10800 (JS513_10800) tenA 2160902..2161591 (-) 690 WP_000396067.1 thiaminase II -
  JS513_RS10805 (JS513_10805) sceD 2161977..2162672 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  JS513_RS10810 (JS513_10810) ssb 2163061..2163456 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  JS513_RS10815 (JS513_10815) - 2163650..2164090 (+) 441 WP_000846746.1 YwpF-like family protein -
  JS513_RS10820 (JS513_10820) fabZ 2164149..2164589 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  JS513_RS10825 (JS513_10825) murA 2164623..2165888 (-) 1266 WP_000358010.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  JS513_RS10830 (JS513_10830) - 2165999..2166232 (-) 234 WP_000384524.1 DUF1146 family protein -
  JS513_RS10835 (JS513_10835) - 2166364..2166456 (-) 93 WP_031824610.1 hypothetical protein -
  JS513_RS10840 (JS513_10840) - 2166792..2167196 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=536803 JS513_RS10810 WP_000932694.1 2163061..2163456(-) (ssb) [Staphylococcus aureus strain 014S_SA]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=536803 JS513_RS10810 WP_000932694.1 2163061..2163456(-) (ssb) [Staphylococcus aureus strain 014S_SA]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992