Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   JS513_RS08020 Genome accession   NZ_CP069799
Coordinates   1656868..1657554 (-) Length   228 a.a.
NCBI ID   WP_204997618.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 014S_SA     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1651868..1662554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS513_RS08000 (JS513_08000) rpsT 1652782..1653033 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  JS513_RS08005 (JS513_08005) holA 1653078..1654052 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  JS513_RS08010 (JS513_08010) comEC 1654109..1656310 (-) 2202 WP_001804765.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JS513_RS08015 (JS513_08015) - 1656315..1656776 (-) 462 WP_000439693.1 ComE operon protein 2 -
  JS513_RS08020 (JS513_08020) comEA 1656868..1657554 (-) 687 WP_204997618.1 ComEA family DNA-binding protein Machinery gene
  JS513_RS08025 (JS513_08025) - 1657594..1658310 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  JS513_RS08030 (JS513_08030) rsfS 1658313..1658666 (-) 354 WP_001088020.1 ribosome silencing factor -
  JS513_RS08035 (JS513_08035) yqeK 1658667..1659251 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  JS513_RS08040 (JS513_08040) nadD 1659241..1659810 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  JS513_RS08045 (JS513_08045) yhbY 1659813..1660103 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  JS513_RS08050 (JS513_08050) aroE 1660107..1660913 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  JS513_RS08055 (JS513_08055) yqeH 1660927..1662027 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25916.61 Da        Isoelectric Point: 9.6842

>NTDB_id=536792 JS513_RS08020 WP_204997618.1 1656868..1657554(-) (comEA) [Staphylococcus aureus strain 014S_SA]
MVLLYQFLLRYKDFLTQWRLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=536792 JS513_RS08020 WP_204997618.1 1656868..1657554(-) (comEA) [Staphylococcus aureus strain 014S_SA]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAGGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

99.559

99.561

0.991
  comEA Staphylococcus aureus MW2

96.916

99.561

0.965