Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   JS513_RS07770 Genome accession   NZ_CP069799
Coordinates   1609499..1609996 (-) Length   165 a.a.
NCBI ID   WP_029694076.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 014S_SA     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1604499..1614996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS513_RS07745 (JS513_07745) gcvPB 1604661..1606133 (-) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  JS513_RS07750 (JS513_07750) gcvPA 1606126..1607472 (-) 1347 WP_000019678.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  JS513_RS07755 (JS513_07755) gcvT 1607492..1608583 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  JS513_RS07760 (JS513_07760) - 1608742..1609266 (-) 525 WP_001015121.1 shikimate kinase -
  JS513_RS07765 (JS513_07765) - 1609256..1609402 (-) 147 WP_001789879.1 hypothetical protein -
  JS513_RS07770 (JS513_07770) comGF 1609499..1609996 (-) 498 WP_029694076.1 competence type IV pilus minor pilin ComGF Machinery gene
  JS513_RS07775 (JS513_07775) comGE 1609914..1610213 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  JS513_RS07780 (JS513_07780) comGD 1610200..1610646 (-) 447 WP_072433556.1 competence type IV pilus minor pilin ComGD Machinery gene
  JS513_RS07785 (JS513_07785) comGC 1610624..1610935 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  JS513_RS07790 (JS513_07790) comGB 1610949..1612019 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  JS513_RS07795 (JS513_07795) comGA 1611991..1612965 (-) 975 WP_000697235.1 competence type IV pilus ATPase ComGA Machinery gene
  JS513_RS07800 (JS513_07800) - 1613016..1613639 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  JS513_RS07805 (JS513_07805) - 1613636..1613965 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  JS513_RS07810 (JS513_07810) - 1613965..1614951 (-) 987 WP_000161315.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19183.92 Da        Isoelectric Point: 10.2877

>NTDB_id=536784 JS513_RS07770 WP_029694076.1 1609499..1609996(-) (comGF) [Staphylococcus aureus strain 014S_SA]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIELRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTSFTANIYYKSIIKITITVKVGTNVQT
KTIFV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=536784 JS513_RS07770 WP_029694076.1 1609499..1609996(-) (comGF) [Staphylococcus aureus strain 014S_SA]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAACTTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CTTCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTTTGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(68-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

96.364

100

0.964
  comGF Staphylococcus aureus N315

96.364

100

0.964