Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   JQU52_RS13020 Genome accession   NZ_CP069798
Coordinates   2559054..2562644 (+) Length   1196 a.a.
NCBI ID   WP_230338894.1    Uniprot ID   A0A892ZGL1
Organism   Paralysiella testudinis strain 26B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2554054..2567644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQU52_RS13000 (JQU52_12995) - 2554527..2554730 (+) 204 WP_230338891.1 cold-shock protein -
  JQU52_RS13005 (JQU52_13000) - 2554842..2555075 (+) 234 WP_230338892.1 DUF1653 domain-containing protein -
  JQU52_RS13010 (JQU52_13005) - 2555163..2555537 (-) 375 WP_328300622.1 hypothetical protein -
  JQU52_RS13015 (JQU52_13010) recC 2555833..2559057 (+) 3225 WP_230338893.1 exodeoxyribonuclease V subunit gamma Machinery gene
  JQU52_RS13020 (JQU52_13015) recB 2559054..2562644 (+) 3591 WP_230338894.1 exodeoxyribonuclease V subunit beta Machinery gene
  JQU52_RS13025 (JQU52_13020) - 2562884..2564404 (+) 1521 WP_230338895.1 catalase -
  JQU52_RS13030 (JQU52_13025) hfq 2564848..2565099 (-) 252 WP_230338896.1 RNA chaperone Hfq -
  JQU52_RS13035 (JQU52_13030) der 2565207..2566664 (-) 1458 WP_230338897.1 ribosome biogenesis GTPase Der -

Sequence

Protein


Download         Length: 1196 a.a.        Molecular weight: 132303.68 Da        Isoelectric Point: 6.5973

>NTDB_id=536763 JQU52_RS13020 WP_230338894.1 2559054..2562644(+) (recB) [Paralysiella testudinis strain 26B]
MTPHTLNPLTLPLAGTSLIEASAGTGKTYNIAALFARLVLVEHMPVERILVVTFTKAATAELKTRLRTRLAEALAYLRQE
PGAEANTDAVLLAIIRAAQQQESDARLILRLQAALNQFDGAAIHTIHGFCQRVLTDYAFLCNTPFDTETAEADPALLLTL
AQDFWRSHISHHPLYAPLAATRGLIPQQWLSELGSWLSRSDIVFRQPESHDLVQAQQQLAACWQTLCRQAETIENLFWPL
KAAKLNGTSFQDRTFQPFFSELLAAVAADNPYYPFSKADKFACFHADFLHDKTKKNQQLSEAEVAILAPLADFGTALAEL
AAAENSTVLQWQYQAFVHIRQQLQNHKQNSRQRSFDDLLADVATALGSGNPQATALAQALAANWHIALIDEFQDTDPLQY
AIFKTAFADQGRPLLMVGDPKQAIYRFRGADIHAYLQAAADTSPAQRYTLQTNYRSHRALVNGIGHLFSGKQRPFVLDGI
PYTPVAAERADSQLAPAAAAIHIRWLHEHSDVDANGKETLPNKDQLRQRAANWCADEIAAAIGQGLSGSLKLKQQPLQAG
DIAVLVETHNQGEMVAASLKQRGVQSVSLGNHSVFATEEALAMAALLAFWLHPQQTATLRFVLAGPLFCRNGAELQALNS
NEAALSQWISWAETAREHWQQHGIYAALQQFSRHSSLETGLLQRRQERSLTNFWQLGELLAAAEADSPAPAALQQWLQHQ
IGNPNQQHGEAQQLRLESDDALVKIVTMHAAKGLEYPLVYCPFVWDGKDQQRRDWALLHRDKQHELVHQSLLSEEDSHTI
VNDHMGELLRLYYVALTRAREQLVLYAAACRNTADNPFGYLLAGSPESSVADTRALWHNGYKNSPVSSLKALWQQCLAAA
PASSAFAWHEGAPAPAQVAPAAAPATPYQALRLPERPFQYIRHTSFTALSRHSHGQNNEAQTPQLDAAETATAPHIEQTP
ETAILGFARGMNAGVCLHALLENTDFARPAAEQQALYAPLLAQYGFADTPVDSLLPMIDAVRHAPLWPGSSLAGIPAAQR
LPEMGFVLHMHDFALPRLRHWFAQPHIGLPAACVQAAARLDFATVNGFLNGFIDMSCQDQQGRVAVIDYKSNYLGARLAN
YHPDAMHQAMAEHHYYLQALIYAIAVARFLHARHALPDSIAIRYLFLRGLNENNHHGIWHWDIATADLADWLPPKE

Nucleotide


Download         Length: 3591 bp        

>NTDB_id=536763 JQU52_RS13020 WP_230338894.1 2559054..2562644(+) (recB) [Paralysiella testudinis strain 26B]
ATGACACCACACACCCTCAACCCGCTCACCCTGCCGCTGGCCGGCACCAGCCTGATTGAAGCCTCCGCCGGCACCGGCAA
AACCTACAACATCGCCGCCCTGTTTGCCCGCTTGGTGTTGGTGGAACACATGCCGGTGGAGCGCATTTTGGTGGTTACCT
TCACCAAAGCCGCCACCGCCGAGCTGAAAACCCGCCTGCGCACCCGCTTGGCCGAAGCGCTGGCCTATTTGCGCCAAGAG
CCGGGTGCCGAGGCCAACACCGATGCGGTATTGCTGGCCATCATCCGCGCCGCGCAACAGCAAGAAAGCGATGCACGGCT
GATTTTGCGGCTTCAGGCAGCCTTAAACCAGTTTGACGGCGCCGCCATCCACACCATCCACGGCTTTTGCCAGCGCGTGC
TCACCGACTACGCCTTTTTGTGCAACACCCCCTTCGACACCGAAACCGCCGAGGCCGACCCCGCCTTGCTCCTCACACTG
GCGCAAGACTTCTGGCGCAGCCACATCAGCCACCACCCGCTGTACGCACCACTGGCCGCCACCAGAGGCCTAATCCCGCA
GCAATGGCTGAGCGAGCTGGGCTCGTGGTTGAGCCGCAGTGATATTGTATTCAGGCAGCCTGAAAGCCACGATTTGGTGC
AAGCACAACAACAGCTGGCCGCCTGCTGGCAAACCCTGTGTCGGCAAGCCGAAACCATAGAAAATTTATTTTGGCCGCTA
AAAGCCGCCAAACTCAATGGCACCAGTTTTCAAGACCGAACATTCCAGCCGTTTTTCAGCGAACTGCTGGCCGCCGTGGC
CGCCGATAATCCTTATTATCCGTTTAGCAAAGCCGACAAATTCGCCTGCTTTCACGCCGATTTTCTGCACGACAAAACCA
AAAAAAACCAACAGCTCAGCGAAGCCGAAGTGGCGATACTGGCGCCGCTGGCCGATTTCGGCACGGCACTGGCCGAGCTG
GCCGCCGCCGAAAACAGCACCGTACTGCAATGGCAATACCAAGCGTTTGTGCACATTCGCCAGCAGCTGCAAAACCACAA
ACAAAACAGCCGCCAACGTAGCTTCGACGACCTGCTCGCCGACGTGGCCACCGCCTTAGGCAGCGGCAACCCGCAAGCCA
CCGCACTGGCGCAGGCATTGGCCGCCAACTGGCACATCGCCCTGATTGACGAATTCCAAGACACCGACCCCTTGCAATAC
GCCATTTTCAAAACCGCCTTTGCCGACCAAGGCCGCCCGCTCTTGATGGTGGGCGACCCCAAGCAAGCCATCTACCGCTT
TCGCGGCGCCGACATCCACGCCTATCTGCAAGCCGCCGCCGACACCTCGCCCGCCCAGCGCTACACCCTGCAAACCAACT
ACCGCAGCCACCGCGCCTTAGTCAACGGCATCGGCCATTTATTTAGCGGCAAACAACGCCCGTTTGTGCTGGACGGCATT
CCCTATACCCCCGTGGCCGCCGAACGTGCCGACAGCCAGCTCGCCCCCGCCGCCGCCGCCATCCACATCCGCTGGCTACA
CGAGCACAGCGATGTTGATGCCAACGGCAAAGAAACCCTGCCCAATAAAGACCAACTGCGCCAACGCGCCGCCAATTGGT
GTGCCGACGAAATCGCCGCCGCCATCGGCCAAGGGCTTTCAGGCAGCCTCAAGCTCAAACAGCAGCCGCTGCAAGCGGGC
GACATCGCCGTGCTGGTGGAAACCCACAACCAAGGCGAAATGGTGGCCGCCAGCTTAAAACAGCGCGGCGTGCAAAGCGT
ATCGCTGGGCAACCACAGCGTATTTGCCACCGAAGAAGCGCTGGCCATGGCCGCCTTGCTGGCGTTTTGGCTGCACCCGC
AGCAAACCGCCACTCTGCGCTTTGTGCTGGCCGGGCCTTTGTTTTGCCGCAACGGCGCCGAACTACAAGCACTCAACAGC
AACGAAGCGGCGTTGAGCCAATGGATAAGCTGGGCAGAAACCGCACGCGAACACTGGCAGCAACACGGCATCTACGCCGC
CTTGCAGCAGTTTTCCCGCCACAGCAGCTTGGAAACCGGCCTGTTGCAACGTCGCCAAGAGCGCAGTCTCACCAACTTCT
GGCAATTGGGCGAACTCTTGGCCGCTGCCGAAGCCGACAGCCCCGCGCCTGCCGCCTTGCAACAATGGCTGCAACACCAA
ATCGGCAATCCTAATCAACAACACGGCGAAGCACAGCAGCTGCGGCTGGAAAGCGACGATGCACTGGTAAAAATCGTCAC
CATGCACGCCGCCAAAGGGCTGGAATACCCGCTGGTGTATTGCCCTTTTGTGTGGGACGGCAAAGACCAACAGCGCCGCG
ACTGGGCGCTGCTGCACCGCGACAAGCAACACGAGCTGGTGCATCAAAGCCTGCTCAGCGAAGAAGACAGCCACACCATC
GTAAACGACCACATGGGCGAGCTGCTGCGCCTGTATTATGTGGCGCTTACCCGAGCGCGCGAACAATTGGTGCTCTACGC
CGCCGCCTGCCGCAACACCGCCGACAACCCATTCGGCTACCTCTTGGCCGGCAGCCCCGAAAGCAGCGTGGCCGACACCC
GTGCGCTGTGGCACAACGGCTATAAAAACAGCCCCGTCAGCAGCCTCAAAGCCCTGTGGCAACAATGCCTGGCCGCCGCA
CCCGCCAGCAGCGCCTTTGCCTGGCACGAAGGCGCACCCGCACCCGCACAAGTAGCACCCGCCGCCGCGCCGGCCACACC
TTACCAAGCGCTCAGGCTGCCTGAAAGGCCGTTTCAATACATCCGCCACACCAGCTTTACCGCGCTCAGCCGCCACAGCC
ACGGCCAAAATAACGAAGCACAAACCCCGCAATTGGACGCCGCCGAAACCGCCACCGCGCCGCACATCGAGCAAACGCCC
GAAACCGCCATACTCGGCTTTGCCCGCGGCATGAATGCAGGCGTGTGCCTGCATGCCTTGCTGGAAAACACCGACTTCGC
CCGCCCCGCAGCCGAGCAACAAGCGCTTTACGCGCCCTTATTGGCACAGTACGGCTTTGCCGACACGCCGGTAGACAGCC
TATTGCCAATGATAGACGCCGTGCGCCATGCGCCCTTGTGGCCGGGCAGCAGCTTGGCCGGCATTCCCGCCGCGCAAAGG
CTGCCTGAAATGGGCTTTGTGCTGCACATGCACGACTTCGCCCTGCCGCGCCTGCGCCACTGGTTTGCCCAGCCGCACAT
CGGCCTGCCCGCCGCCTGTGTACAAGCCGCCGCCCGCCTTGACTTTGCCACCGTAAACGGCTTTCTCAACGGCTTTATCG
ACATGAGCTGCCAAGACCAGCAAGGCCGCGTGGCGGTAATCGACTACAAATCCAATTACTTGGGCGCCCGCTTGGCCAAC
TACCACCCCGACGCCATGCACCAGGCCATGGCCGAACACCACTATTATTTGCAGGCACTGATTTACGCCATCGCCGTGGC
GCGCTTCCTCCACGCCCGCCACGCCCTGCCCGACAGCATCGCCATCCGCTACCTGTTTTTACGCGGCCTAAACGAAAACA
ACCACCACGGCATCTGGCACTGGGACATCGCCACCGCCGACTTGGCCGATTGGCTACCGCCCAAAGAATAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(448-826)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(1-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

48.593

100

0.491