Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   JQU52_RS13015 Genome accession   NZ_CP069798
Coordinates   2555833..2559057 (+) Length   1074 a.a.
NCBI ID   WP_230338893.1    Uniprot ID   A0A892ZID0
Organism   Paralysiella testudinis strain 26B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2550833..2564057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQU52_RS12985 (JQU52_12980) purE 2550893..2551384 (+) 492 WP_230338888.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  JQU52_RS12990 (JQU52_12985) clpA 2551558..2553849 (-) 2292 WP_230338889.1 ATP-dependent Clp protease ATP-binding subunit ClpA -
  JQU52_RS12995 (JQU52_12990) clpS 2553978..2554295 (-) 318 WP_230338890.1 ATP-dependent Clp protease adapter ClpS -
  JQU52_RS13000 (JQU52_12995) - 2554527..2554730 (+) 204 WP_230338891.1 cold-shock protein -
  JQU52_RS13005 (JQU52_13000) - 2554842..2555075 (+) 234 WP_230338892.1 DUF1653 domain-containing protein -
  JQU52_RS13010 (JQU52_13005) - 2555163..2555537 (-) 375 WP_328300622.1 hypothetical protein -
  JQU52_RS13015 (JQU52_13010) recC 2555833..2559057 (+) 3225 WP_230338893.1 exodeoxyribonuclease V subunit gamma Machinery gene
  JQU52_RS13020 (JQU52_13015) recB 2559054..2562644 (+) 3591 WP_230338894.1 exodeoxyribonuclease V subunit beta Machinery gene

Sequence

Protein


Download         Length: 1074 a.a.        Molecular weight: 120419.40 Da        Isoelectric Point: 6.2451

>NTDB_id=536762 JQU52_RS13015 WP_230338893.1 2555833..2559057(+) (recC) [Paralysiella testudinis strain 26B]
MLYLYQSNRLEYLASTLAAIYRLPTAAPVWAAEEIVVQSQGMRRYLNQFLAREHGIAANLRYSLPAGFAWRLLRQVLPGT
PALNPFSPEVLRWRLLALFQSEAFRQPEFAATRAALADYLHSSANAPYHLAGQLADIYDQYLVYRPDWILAWQNGDTANL
GADEHWQAALWRHLAEHGSQSHRVAQWQGLMHNLHAEHLPARLLVFGIAALAPMYLDLLQAAAQHTDVHVFALNPSREYW
GNVLPAARLLDLDETDLSASGHPLLASLGKQGRDFFDALAAMPNVHIETPIYDDVPANTLLGHLQADIQNLRLPERSTPL
PFDHSIQFAAAHSPLRELQMLKDQLLQDLAAHPEWQPHDIAVLTPHIEPYLPFIEAVFGHSQGGNQALPFSVADVKTRHR
QPLMQLLAQWLLLVQSRLEADQLLPLLDSPVLRERFDFSQADVDLIAHAIAEQGIRWGSDEAMRRQYGGHDHAFSWQQGR
ERTVLGWLLPQTSDAQTWQGVLPWYADIGHTPVLARAQHCVDVLIEHYQHWQQPASIEEWAQRIRLWLADMADSDTLGSA
AMQQLETALAAWSEQAALAGFNSLLPPYTAIEHIQRFLDSSSEAGFLRSGITFCSMVPMRSLPFKCLCLIGLNDGDYPRT
TKAAAFDLIARHPRHGDRARRDDDRYLFLESILSARQKLYLSYIGKDIRKNEALAPSALLNELTDTLAAMTATPTPQFLE
QHRCQHPLQAFSQQYFNGSLASTRQDYADALSHPAEVIAPFWPASAEQDNTDTITPNHPLSITQLIAFWRNPVLKWLQQT
LQWQPYRPAEAWQAAEPFAVETEAALNQAYVAARRQGQNLDRTDDALRQMNVLPDGLLGHTLGQPWRIAALSLNLALLNS
PRVADAEFNFSHHGLILSGSLNQLHRHGQLIDADTKPHAPQTIAHYLQHLIFCAADVPGIEHSTHILYPPAPLQLPPIDA
ATAQQLLRPWLAWYVPGQQQPLPFFAQTGLAAAQAWYKQDRDSTTPPNAAKQAAHSAYVGNRFKPGQAQRTEVALAFGRH
DTLPTDTPLFWQLVADLLLPMIAHTQDAALETDA

Nucleotide


Download         Length: 3225 bp        

>NTDB_id=536762 JQU52_RS13015 WP_230338893.1 2555833..2559057(+) (recC) [Paralysiella testudinis strain 26B]
ATGCTTTATCTATACCAATCCAACCGCTTGGAATACCTGGCCAGCACCTTGGCCGCCATTTACCGCCTACCCACCGCAGC
ACCTGTGTGGGCGGCGGAGGAGATTGTGGTGCAAAGCCAAGGGATGCGCCGTTATCTGAACCAGTTTTTGGCGCGCGAGC
ACGGCATTGCCGCCAATCTTCGCTACAGCCTGCCCGCCGGCTTTGCTTGGCGGCTGTTGCGCCAAGTGTTGCCCGGCACG
CCGGCATTGAATCCTTTCAGCCCCGAAGTATTGCGCTGGCGGCTGTTGGCCTTGTTTCAAAGTGAAGCTTTCAGGCAGCC
TGAATTTGCCGCCACCCGCGCCGCCCTGGCCGATTATCTGCACAGCAGCGCCAATGCGCCCTACCACTTGGCCGGGCAAT
TGGCGGATATTTACGACCAATATCTGGTTTACCGCCCCGACTGGATTTTGGCCTGGCAAAACGGCGACACCGCCAATCTG
GGTGCAGACGAGCATTGGCAGGCCGCCTTGTGGCGCCACCTGGCCGAGCACGGCAGCCAAAGCCACCGTGTGGCGCAATG
GCAAGGGCTGATGCACAATCTGCACGCCGAGCATCTGCCTGCACGGCTGCTGGTGTTCGGCATTGCCGCGTTGGCACCGA
TGTATCTGGATTTACTGCAAGCAGCAGCGCAACACACCGATGTGCATGTGTTTGCGCTCAACCCCAGCCGCGAATACTGG
GGCAATGTACTGCCCGCCGCACGGCTGCTCGATTTAGACGAAACCGATTTATCCGCCAGCGGCCATCCCTTGCTGGCCAG
CCTCGGCAAGCAAGGGCGCGACTTTTTTGATGCGCTGGCGGCCATGCCCAATGTGCACATCGAAACGCCGATTTACGATG
ATGTTCCGGCAAACACCTTACTCGGCCATTTACAGGCCGATATTCAGAATTTAAGGCTGCCTGAACGCAGCACGCCCTTG
CCGTTTGACCACAGCATCCAATTTGCCGCCGCCCACAGCCCCTTGCGCGAGCTGCAAATGCTCAAAGACCAGCTATTGCA
AGACTTGGCCGCCCACCCCGAATGGCAGCCGCACGACATCGCCGTGCTCACCCCCCATATCGAGCCTTATCTGCCCTTTA
TCGAAGCCGTGTTCGGCCACAGCCAAGGCGGCAACCAGGCACTGCCGTTTTCGGTGGCCGACGTTAAAACCCGCCACCGG
CAGCCCTTAATGCAGCTATTGGCACAATGGCTGCTACTGGTGCAAAGCCGCTTAGAGGCCGACCAACTGCTGCCGCTGCT
TGATTCACCGGTGCTGCGCGAGCGCTTTGACTTCAGCCAAGCCGATGTCGACCTGATTGCCCACGCCATTGCCGAGCAAG
GTATCCGCTGGGGCAGCGATGAAGCCATGCGCCGTCAATACGGCGGCCACGACCACGCCTTTAGCTGGCAGCAAGGGCGC
GAGCGCACGGTATTGGGCTGGCTGTTGCCGCAAACCTCCGATGCCCAAACCTGGCAAGGCGTGCTGCCGTGGTATGCCGA
TATCGGCCACACGCCGGTGCTGGCGCGTGCACAGCATTGTGTCGACGTTTTGATCGAGCATTATCAACACTGGCAACAGC
CCGCCAGTATCGAAGAATGGGCGCAACGCATCCGCCTCTGGCTGGCCGACATGGCCGACAGCGACACCCTCGGCAGTGCC
GCCATGCAGCAGCTCGAAACCGCCTTGGCCGCTTGGAGCGAACAAGCCGCACTGGCCGGTTTTAACAGCCTGCTGCCGCC
CTACACCGCCATCGAACACATCCAGCGCTTTTTAGACAGCAGCAGCGAAGCCGGCTTTTTGCGCAGCGGCATCACCTTTT
GCAGCATGGTGCCCATGCGCAGCCTACCGTTCAAATGCCTGTGCCTGATTGGGCTGAACGACGGCGACTACCCGCGCACC
ACCAAAGCCGCCGCCTTCGACTTGATTGCCCGCCACCCGCGCCACGGCGACCGCGCCCGCCGCGACGACGACCGCTACCT
GTTTCTCGAATCCATCCTCAGCGCACGCCAAAAGCTGTATTTATCCTATATCGGCAAAGACATCCGCAAAAACGAAGCCT
TGGCACCCTCGGCCTTGCTCAACGAGCTCACCGACACCCTCGCCGCCATGACCGCCACCCCCACGCCGCAATTTTTAGAG
CAACACCGCTGCCAACACCCCTTGCAGGCGTTTTCGCAGCAATATTTCAACGGCAGCTTGGCCAGCACCCGCCAAGACTA
TGCCGACGCACTCAGCCACCCGGCAGAAGTTATTGCCCCGTTTTGGCCGGCAAGTGCCGAGCAAGACAACACCGACACCA
TCACACCCAACCACCCGCTTTCCATCACTCAATTGATTGCCTTCTGGCGCAACCCGGTGCTCAAATGGCTGCAACAAACA
CTGCAATGGCAGCCCTACCGCCCGGCCGAAGCGTGGCAGGCGGCAGAGCCGTTTGCCGTGGAAACCGAAGCCGCGCTCAA
CCAAGCCTATGTGGCCGCGCGGCGGCAAGGACAAAATTTGGATCGCACCGATGACGCACTGCGACAAATGAATGTATTGC
CCGACGGCCTGCTGGGCCACACCCTCGGCCAGCCGTGGCGCATTGCCGCCTTATCCCTTAATCTGGCCTTGCTCAACAGC
CCGCGCGTGGCCGATGCCGAATTTAATTTCAGCCACCACGGCCTTATCCTTTCAGGCAGCCTCAACCAACTACACCGGCA
CGGCCAGCTGATTGATGCAGACACCAAACCCCATGCCCCGCAAACCATCGCCCACTATTTGCAACACCTGATTTTTTGCG
CCGCCGATGTGCCGGGAATTGAGCACAGCACCCACATCCTCTATCCACCCGCACCGCTGCAATTGCCGCCCATTGATGCG
GCCACCGCACAGCAGCTGCTGCGCCCGTGGCTGGCTTGGTATGTGCCGGGGCAACAGCAGCCGCTGCCGTTTTTTGCCCA
AACCGGGCTGGCGGCGGCTCAAGCCTGGTATAAACAAGACCGCGATAGCACCACCCCGCCCAATGCCGCCAAGCAAGCCG
CCCATAGCGCCTATGTGGGCAACCGCTTCAAGCCCGGCCAGGCACAGCGCACCGAAGTGGCACTGGCTTTTGGCCGCCAC
GACACCCTGCCCACCGACACCCCGCTGTTTTGGCAGCTGGTGGCCGACTTGCTGCTGCCCATGATTGCCCACACACAGGA
CGCCGCCTTGGAAACCGACGCATGA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(778-995)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

49.767

100

0.498