Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   JQU52_RS12585 Genome accession   NZ_CP069798
Coordinates   2464225..2466498 (-) Length   757 a.a.
NCBI ID   WP_230338817.1    Uniprot ID   -
Organism   Paralysiella testudinis strain 26B     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 2459225..2471498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQU52_RS12560 (JQU52_12560) - 2459636..2459839 (-) 204 WP_230338812.1 YbdD/YjiX family protein -
  JQU52_RS12565 (JQU52_12565) - 2459832..2461919 (-) 2088 WP_230338813.1 carbon starvation CstA family protein -
  JQU52_RS12570 (JQU52_12570) - 2462273..2462986 (+) 714 WP_230338814.1 phosphoglycolate phosphatase -
  JQU52_RS12575 (JQU52_12575) recX 2462988..2463440 (+) 453 WP_230338815.1 recombination regulator RecX Regulator
  JQU52_RS12580 (JQU52_12580) - 2463924..2464181 (-) 258 WP_230338816.1 hypothetical protein -
  JQU52_RS12585 (JQU52_12585) comA 2464225..2466498 (-) 2274 WP_230338817.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JQU52_RS12590 (JQU52_12590) - 2466675..2467009 (-) 335 Protein_2468 transposase -
  JQU52_RS12595 (JQU52_12600) - 2467030..2467242 (-) 213 WP_230338818.1 hypothetical protein -
  JQU52_RS12600 (JQU52_12605) - 2467226..2467678 (-) 453 WP_230338819.1 transposase -
  JQU52_RS12605 (JQU52_12610) - 2468672..2469658 (-) 987 WP_230338820.1 nucleoside hydrolase -
  JQU52_RS12610 (JQU52_12615) tfpZ 2470053..2470787 (-) 735 WP_328300585.1 TfpX/TfpZ family type IV pilin accessory protein -
  JQU52_RS12615 (JQU52_12620) - 2470877..2471356 (-) 480 WP_328300587.1 pilin -

Sequence

Protein


Download         Length: 757 a.a.        Molecular weight: 83769.15 Da        Isoelectric Point: 10.1795

>NTDB_id=536760 JQU52_RS12585 WP_230338817.1 2464225..2466498(-) (comA) [Paralysiella testudinis strain 26B]
MPKVFILPWLPCWVVGVLLSLALPFGGAVYWLAAALLCVLLWAWWRQPWLGWMLAVLLGCAYGVWRAELALAQQWPLVVP
QQAAPLVITVATPPQQDERRVRFEALAYTENGQRYRLQLSDYRNREWPLGSRWQVGVRVRPMVGEVNAVGFNREAWALAN
GIQGVGSIGQMRERLPESATAAIAWQRYRAGLSVRWQATAADYPLGVALMRALSLGEQAALPQAAWQAFRPLGINHLVSI
SGLHIGLVALWAGWLMRWTLRWLPWQPAQPKLWWLAAGVAAALFYAALAGFAVPTQRALLMLLVLAWGWWRQRHQTPWQV
WWAALALVLLFDPLSALAPGFWLSFGLVAALLWAGSGRVAERGLRWRAWRTALRAQWAAALASLVLVAYFFGTVPLLSPL
VNAVAIPWFSWLLVPLALLGLLLPWQAPLMWMAALAEYTLRALMWLGEYAPVYAPAQPPWPVVVLGAVAVLVLLLPRGVG
LRPWACLCLLMLLGFRQPLLPANTAKITVWDVGQGLAVSVQTRQRHLLFDTGTAAATEMQLLPNLRAQGVRGLDVLVLSH
QDADHDGGAAALRQALKPQRVFAGQPQAYADADWCAGGLNWMWDGVWFEFLTLPVASPLGDNDHSCVLRVVAGDKALLLT
GDLGVRGEAALLAEYGEDVFSHVLILGHHGSRTSSSPAFLRRVRPEWAVASSGFANAYRHPHPQVVDLLALRQVALYRTD
NQGGASVLLAEGQPLQWQPLRPRVPFWQRKPLRGGDD

Nucleotide


Download         Length: 2274 bp        

>NTDB_id=536760 JQU52_RS12585 WP_230338817.1 2464225..2466498(-) (comA) [Paralysiella testudinis strain 26B]
ATGCCAAAAGTGTTTATTTTGCCGTGGCTGCCCTGCTGGGTAGTGGGGGTGTTGTTGTCTCTGGCTTTGCCGTTTGGCGG
CGCGGTGTATTGGCTGGCGGCGGCTTTATTGTGTGTGTTGCTGTGGGCTTGGTGGCGGCAGCCGTGGCTGGGCTGGATGT
TGGCGGTATTATTGGGCTGCGCTTACGGGGTGTGGCGTGCCGAGTTGGCGCTGGCGCAGCAGTGGCCGTTGGTGGTGCCG
CAGCAGGCCGCACCGCTGGTGATTACGGTGGCCACGCCGCCGCAGCAAGACGAGCGGCGGGTGCGTTTTGAGGCGCTGGC
TTACACCGAAAATGGCCAGCGCTACCGTTTGCAGCTGTCGGACTATCGCAATCGGGAATGGCCGCTGGGCAGCCGTTGGC
AAGTGGGTGTGCGGGTGCGGCCGATGGTGGGCGAAGTGAATGCGGTGGGTTTTAACCGCGAAGCGTGGGCGCTGGCCAAT
GGGATTCAGGGCGTGGGCAGTATCGGCCAAATGCGCGAAAGGCTGCCTGAAAGCGCCACAGCGGCGATTGCTTGGCAGCG
CTACCGTGCGGGCTTGAGTGTGCGCTGGCAGGCCACGGCAGCGGATTATCCTTTGGGCGTGGCTTTGATGCGGGCGCTGA
GTTTAGGTGAGCAAGCGGCGTTACCGCAGGCTGCGTGGCAAGCGTTTCGCCCTTTGGGCATCAACCATTTAGTAAGCATT
TCCGGTTTGCATATCGGCTTGGTGGCGCTGTGGGCGGGCTGGCTGATGCGTTGGACATTGCGCTGGCTGCCGTGGCAACC
GGCGCAGCCCAAGCTGTGGTGGCTGGCGGCGGGGGTGGCGGCGGCTTTGTTTTATGCGGCGCTGGCCGGGTTTGCGGTGC
CCACGCAGCGGGCGCTGTTGATGCTGTTGGTGTTGGCTTGGGGCTGGTGGCGGCAGCGCCATCAAACGCCGTGGCAGGTT
TGGTGGGCGGCGCTGGCTTTGGTGTTGCTGTTTGATCCTTTATCGGCTTTGGCACCGGGGTTTTGGCTGTCGTTTGGTTT
GGTGGCGGCGTTATTGTGGGCGGGCAGTGGCCGCGTGGCCGAGCGCGGGCTGCGTTGGCGGGCTTGGCGCACGGCGTTGC
GGGCGCAATGGGCGGCGGCTTTGGCTTCGCTGGTGCTGGTGGCGTATTTTTTCGGCACGGTGCCTTTGCTCAGCCCGCTG
GTGAATGCCGTGGCGATTCCGTGGTTTTCATGGCTGCTGGTGCCGCTGGCTTTGCTGGGCTTGCTGTTGCCATGGCAGGC
GCCGTTGATGTGGATGGCGGCGCTGGCCGAATATACGCTGCGGGCGCTGATGTGGCTGGGCGAATATGCGCCGGTGTATG
CCCCGGCGCAGCCACCGTGGCCAGTGGTGGTGCTGGGTGCGGTGGCGGTGTTGGTGCTGTTGTTGCCGCGCGGTGTGGGT
TTACGGCCGTGGGCGTGCTTGTGTTTACTGATGCTGTTGGGTTTCAGGCAGCCTTTATTACCGGCGAACACGGCCAAAAT
CACGGTGTGGGATGTAGGGCAGGGCTTGGCGGTGTCGGTGCAAACGCGGCAGCGCCATTTGCTGTTTGACACCGGCACCG
CCGCCGCCACGGAAATGCAGCTGCTGCCCAATTTGCGTGCTCAGGGCGTGCGTGGCTTGGATGTGTTGGTGTTGTCGCAC
CAGGATGCGGATCACGATGGCGGCGCGGCGGCATTGCGGCAGGCACTCAAGCCGCAGCGGGTGTTTGCCGGGCAGCCGCA
AGCCTATGCCGATGCGGATTGGTGTGCGGGCGGGCTGAATTGGATGTGGGACGGCGTGTGGTTTGAGTTTCTCACCCTGC
CGGTGGCTTCGCCCTTGGGCGACAACGACCATAGCTGTGTTTTGCGGGTGGTGGCCGGGGATAAGGCGCTGCTGCTCACC
GGTGATTTGGGCGTGCGCGGTGAAGCGGCATTGCTGGCCGAATACGGTGAAGATGTGTTTAGCCACGTGTTGATATTGGG
GCACCACGGCAGCCGCACGTCCAGCTCGCCTGCATTTTTGCGCCGGGTGAGGCCGGAGTGGGCGGTGGCTTCCAGCGGCT
TTGCCAATGCCTACCGGCACCCGCATCCGCAAGTGGTGGATTTGCTGGCGCTGCGGCAGGTGGCGCTGTATCGCACCGAT
AATCAGGGCGGTGCCAGTGTGTTGCTGGCAGAAGGGCAGCCTTTGCAGTGGCAACCGCTGCGGCCACGGGTGCCGTTTTG
GCAGCGCAAGCCGTTGCGGGGTGGAGATGATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(213-476)

Metallo-beta-lactamase superfamily (Lactamase_B)

(512-681)

Domain of unknown function (DUF4131) (DUF4131)

(9-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

51.184

100

0.514