Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JQU52_RS00110 Genome accession   NZ_CP069798
Coordinates   24222..25754 (-) Length   510 a.a.
NCBI ID   WP_230339196.1    Uniprot ID   -
Organism   Paralysiella testudinis strain 26B     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 19222..30754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQU52_RS00085 (JQU52_00085) azu 20492..21043 (+) 552 WP_230339194.1 azurin -
  JQU52_RS00090 (JQU52_00090) - 21194..21529 (-) 336 WP_230338027.1 transposase -
  JQU52_RS00095 (JQU52_00095) - 21550..22197 (-) 648 WP_230338180.1 transposase -
  JQU52_RS00100 (JQU52_00100) - 22506..23426 (-) 921 WP_230339195.1 NUDIX hydrolase family protein -
  JQU52_RS00105 (JQU52_00105) - 23436..24179 (-) 744 WP_379061488.1 class I SAM-dependent methyltransferase -
  JQU52_RS00110 (JQU52_00110) pilR 24222..25754 (-) 1533 WP_230339196.1 sigma-54 dependent transcriptional regulator Regulator
  JQU52_RS00115 (JQU52_00115) - 25747..27333 (-) 1587 WP_230339197.1 PAS domain-containing sensor histidine kinase -
  JQU52_RS00120 (JQU52_00120) parC 27335..29650 (-) 2316 WP_230339198.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55560.76 Da        Isoelectric Point: 5.9874

>NTDB_id=536735 JQU52_RS00110 WP_230339196.1 24222..25754(-) (pilR) [Paralysiella testudinis strain 26B]
MSNADLKRPVLVVDDEADIRDLMEMTLMKMGLSVYTAQGVAAAKQQLAERRFSLVLTDMRMPDGSGLDVVDFINSEGLDV
PVAVITAFGNADQAVQALKNGAFDYLQKPITLAQLRSLVKSAIKINEGEEPVAVAPSPASEPPPTVPAPKPQAAPGKPAN
APAASTAAKPVAPAAAKPASASAEIPRLLGTSALMEDVRQMVRKLAKTMVPVYIAGESGSGKEQAARSIHELSVRREQPF
VAVNCGAIPENLMESEFFGYKKGSFTGADTDRLGFFQHADGGTLFLDEVADLPLAMQVKLLRAIQEKAVRRIGEATEKTV
DVRIICATHKDLAAQVAAGNFRQDLFYRLNVVSLAMPPLREMREDLPRLVGQLLRKHQGTSKLAISKEAQKALLHYNYPG
NFRELENILERAVALAQDEVIDVDDLQIHSHQAVMAAEPVEVWGGNETGVAAVADFQLGRTQIQDYLDDIERAILTQALQ
QTRYNRTQSAKLLGISFRSMRYRMERLSIE

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=536735 JQU52_RS00110 WP_230339196.1 24222..25754(-) (pilR) [Paralysiella testudinis strain 26B]
ATGAGTAATGCAGACTTGAAACGGCCGGTATTGGTGGTGGACGACGAAGCCGATATCCGCGACCTGATGGAAATGACGTT
GATGAAAATGGGCTTGTCGGTCTACACCGCCCAAGGCGTGGCGGCGGCCAAGCAACAGCTGGCCGAGCGGCGCTTTTCGT
TGGTGCTCACCGATATGCGCATGCCCGACGGCTCCGGCCTCGATGTGGTGGACTTTATCAACAGCGAAGGGCTGGATGTG
CCGGTGGCGGTGATTACCGCTTTCGGCAATGCCGACCAAGCGGTGCAGGCGCTGAAAAACGGTGCTTTTGACTATCTGCA
AAAGCCGATTACGCTGGCACAATTGCGCAGCCTAGTGAAGTCGGCGATTAAGATAAACGAAGGCGAAGAGCCTGTTGCGG
TAGCTCCGTCGCCCGCGAGTGAGCCGCCGCCCACCGTGCCAGCGCCAAAGCCGCAGGCAGCCCCTGGCAAACCAGCCAAC
GCACCGGCAGCGTCCACCGCTGCCAAACCCGTAGCGCCCGCTGCCGCGAAACCGGCCAGTGCCAGCGCAGAAATCCCGCG
CCTGCTCGGCACTTCGGCCTTGATGGAAGACGTGCGCCAGATGGTGCGCAAGCTGGCCAAAACCATGGTGCCGGTGTACA
TCGCCGGTGAATCGGGTAGCGGTAAAGAGCAGGCGGCACGCAGCATTCATGAATTGTCGGTGCGGCGCGAACAGCCTTTT
GTGGCGGTGAACTGCGGCGCTATTCCCGAAAACCTGATGGAAAGCGAATTTTTCGGCTATAAAAAAGGCAGTTTTACCGG
CGCCGATACCGATCGGTTGGGCTTTTTCCAACATGCCGATGGCGGCACGCTGTTTTTGGACGAAGTGGCTGATTTGCCGC
TGGCGATGCAGGTGAAATTACTGCGGGCAATTCAAGAAAAAGCCGTGCGTCGCATTGGTGAAGCCACCGAAAAAACGGTA
GACGTGCGCATTATTTGTGCCACCCACAAAGATTTGGCCGCTCAAGTGGCGGCGGGTAACTTCCGCCAAGACTTGTTTTA
CCGCTTGAATGTGGTGTCGCTGGCGATGCCGCCCTTGCGTGAAATGCGCGAAGACCTGCCCCGGTTGGTGGGGCAGTTGC
TGCGCAAACATCAAGGCACGAGCAAGCTGGCCATCAGCAAAGAGGCGCAAAAAGCCCTGCTGCACTACAACTATCCGGGC
AACTTCCGCGAGCTGGAAAACATCCTCGAGCGTGCAGTGGCCTTGGCACAGGATGAAGTGATTGATGTCGACGATTTGCA
AATCCACAGCCATCAGGCCGTCATGGCCGCCGAACCGGTAGAAGTGTGGGGCGGCAACGAAACCGGCGTGGCGGCAGTGG
CCGATTTCCAATTGGGGCGCACCCAGATTCAGGATTATTTGGACGACATCGAACGCGCCATTTTAACCCAGGCCTTGCAG
CAAACCCGCTACAACCGCACCCAGTCGGCCAAATTATTGGGCATCAGCTTTCGCTCCATGCGCTACCGCATGGAACGGCT
GTCGATTGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-119)

Sigma-54 interaction domain (Sigma54_activat)

(189-354)

Bacterial regulatory protein, Fis family (HTH_8)

(467-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

49.112

99.412

0.488
  pilR Acinetobacter baumannii strain A118

40

99.02

0.396