Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JR441_RS16095 Genome accession   NZ_CP069789
Coordinates   3119381..3120025 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain BIM B-569G     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3114381..3125025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR441_RS16060 (JR441_16060) mrpB 3115573..3116004 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  JR441_RS16065 (JR441_16065) mrpC 3116004..3116345 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  JR441_RS16070 (JR441_16070) mrpD 3116338..3117819 (+) 1482 WP_204551362.1 Na+/H+ antiporter subunit D -
  JR441_RS16075 (JR441_16075) mrpE 3117825..3118301 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  JR441_RS16080 (JR441_16080) mrpF 3118301..3118585 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  JR441_RS16085 (JR441_16085) mnhG 3118569..3118943 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  JR441_RS16090 (JR441_16090) yuxO 3118982..3119362 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  JR441_RS16095 (JR441_16095) comA 3119381..3120025 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  JR441_RS16100 (JR441_16100) - 3120106..3122390 (-) 2285 Protein_3132 histidine kinase -
  JR441_RS16105 (JR441_16105) comX 3122406..3122627 (-) 222 WP_014480704.1 competence pheromone ComX -
  JR441_RS16110 (JR441_16110) - 3122629..3123492 (-) 864 WP_043858576.1 polyprenyl synthetase family protein -
  JR441_RS16115 (JR441_16115) degQ 3123677..3123817 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  JR441_RS16120 (JR441_16120) - 3124039..3124164 (+) 126 WP_121549029.1 hypothetical protein -
  JR441_RS16125 (JR441_16125) - 3124279..3124647 (+) 369 WP_038427878.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=536636 JR441_RS16095 WP_003220716.1 3119381..3120025(-) (comA) [Bacillus subtilis strain BIM B-569G]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=536636 JR441_RS16095 WP_003220716.1 3119381..3120025(-) (comA) [Bacillus subtilis strain BIM B-569G]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTTGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1