Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JR441_RS01945 Genome accession   NZ_CP069789
Coordinates   362143..362592 (-) Length   149 a.a.
NCBI ID   WP_003234608.1    Uniprot ID   A0A8E0S750
Organism   Bacillus subtilis strain BIM B-569G     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 357143..367592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR441_RS01910 (JR441_01910) yckA 357418..358098 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  JR441_RS01915 (JR441_01915) yckB 358108..358971 (-) 864 WP_029727074.1 transporter substrate-binding domain-containing protein -
  JR441_RS01920 (JR441_01920) - 359133..359325 (+) 193 Protein_334 hypothetical protein -
  JR441_RS01925 (JR441_01925) - 359361..359681 (+) 321 Protein_335 RDD family protein -
  JR441_RS01930 (JR441_01930) yckD 359763..360095 (+) 333 WP_015252849.1 YckD family protein -
  JR441_RS01935 (JR441_01935) bglC 360248..361681 (+) 1434 WP_032722901.1 6-phospho-beta-glucosidase -
  JR441_RS01940 (JR441_01940) nin/comJ 361718..362116 (-) 399 WP_032722902.1 DNA-entry nuclease inhibitor Regulator
  JR441_RS01945 (JR441_01945) nucA/comI 362143..362592 (-) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  JR441_RS01950 (JR441_01950) tlpC 362760..364481 (-) 1722 WP_029727077.1 methyl-accepting chemotaxis protein TlpC -
  JR441_RS01955 (JR441_01955) hxlB 364592..365149 (-) 558 WP_003234605.1 6-phospho-3-hexuloisomerase -
  JR441_RS01960 (JR441_01960) hxlA 365155..365787 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  JR441_RS01965 (JR441_01965) hxlR 366020..366382 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16470.42 Da        Isoelectric Point: 4.5282

>NTDB_id=536582 JR441_RS01945 WP_003234608.1 362143..362592(-) (nucA/comI) [Bacillus subtilis strain BIM B-569G]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSTDQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=536582 JR441_RS01945 WP_003234608.1 362143..362592(-) (nucA/comI) [Bacillus subtilis strain BIM B-569G]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTTTCAACTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98