Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   LH706_RS01825 Genome accession   NZ_CP085043
Coordinates   378128..379753 (+) Length   541 a.a.
NCBI ID   WP_377272475.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RS638     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 373128..384753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH706_RS01790 (LH706_01800) - 374119..374697 (+) 579 WP_265069627.1 hypothetical protein -
  LH706_RS01795 (LH706_01805) - 374699..375187 (+) 489 WP_028854130.1 hypothetical protein -
  LH706_RS01800 (LH706_01810) - 375184..375660 (+) 477 WP_247317829.1 type II secretion system protein -
  LH706_RS01805 (LH706_01815) - 375654..376040 (+) 387 WP_247393758.1 type IV pilin protein -
  LH706_RS01810 (LH706_01820) - 376027..376491 (+) 465 WP_011003776.1 type II secretion system protein -
  LH706_RS01815 (LH706_01825) gspG 376495..376929 (+) 435 WP_011003775.1 type II secretion system major pseudopilin GspG -
  LH706_RS01820 (LH706_01830) - 376933..378126 (+) 1194 WP_247393761.1 type II secretion system F family protein -
  LH706_RS01825 (LH706_01835) pilF 378128..379753 (+) 1626 WP_377272475.1 GspE/PulE family protein Machinery gene
  LH706_RS01830 (LH706_01840) - 379746..380462 (+) 717 WP_247393765.1 hypothetical protein -
  LH706_RS01835 (LH706_01845) - 380452..380946 (+) 495 WP_247393768.1 hypothetical protein -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 59139.83 Da        Isoelectric Point: 6.3811

>NTDB_id=536495 LH706_RS01825 WP_377272475.1 378128..379753(+) (pilF) [Ralstonia pseudosolanacearum strain RS638]
MSEWAPDWTAFGNWLRAARMARGSGSLATALAEQAGMPAQALVSAAAGRFGFHLLDAEGDLAPLVTLDPISLKDCRQHKI
LPLRIAGDWVIAMDDPWDEALVRWVNEKLGHARLAWMDGLHSLAILERALSTASASALLAQRGAEKTVQDQDVGRVVSHD
SIESTESAVVRFLDAVLLDAWRAGASDIHVETSRSGLHIKLRLDGVLVPGPAFTGARSPSEVLNRIKVLAQLDIGETRLP
QDGRFRVRLEGRDVDMRVSIMPNVFGEDAVIRLLDKAQLRGASETLTLEALGFDTAATATIRRLTKEPHGMLLVTGPTGS
GKTTTLYAALSEINTGRDKIITIEDPVEYELSGILQIPVNEKKGLTFARGLRSILRHDPDQILVGEIRDPETAEIAVQAA
LTGHLVFTSVHANSALDVVGRFLHMGVDPYNFMSALIGIVSQRLLRLKCPECAPASPDPGSRSVGCPACRYTGYRGRTVV
WEIVPVNDTIRELVIRREPLRLIREQSRQMGVVSLRDQAVRMVERGLTTFEEIDRVVSPNE

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=536495 LH706_RS01825 WP_377272475.1 378128..379753(+) (pilF) [Ralstonia pseudosolanacearum strain RS638]
ATGTCCGAATGGGCGCCCGATTGGACTGCGTTCGGCAACTGGCTGCGTGCCGCACGCATGGCGCGGGGCAGCGGCAGCCT
GGCCACGGCCCTCGCCGAGCAGGCCGGCATGCCGGCGCAGGCGCTGGTCTCGGCGGCGGCCGGCCGGTTCGGTTTCCATC
TGCTGGATGCGGAAGGCGACCTCGCCCCGCTGGTCACGCTCGACCCGATCTCGCTCAAGGACTGCCGCCAGCACAAGATC
CTGCCGCTGCGCATCGCCGGCGACTGGGTCATCGCGATGGACGACCCGTGGGACGAGGCGCTGGTGCGCTGGGTCAATGA
GAAGCTCGGCCATGCCAGGCTGGCCTGGATGGATGGTCTCCACAGTCTTGCCATCCTCGAACGCGCTCTGAGCACGGCTT
CGGCGTCCGCCCTGCTAGCCCAGCGAGGCGCGGAAAAGACGGTCCAGGACCAGGACGTCGGCCGTGTCGTCTCCCACGAC
TCCATCGAATCGACGGAAAGCGCCGTCGTACGCTTCCTCGACGCGGTATTGCTCGACGCCTGGCGGGCCGGTGCCAGCGA
CATCCACGTCGAGACCTCCCGCTCCGGCCTGCACATCAAGCTGCGGCTGGACGGCGTACTGGTGCCTGGCCCCGCGTTCA
CCGGTGCGCGCTCGCCCAGCGAAGTGCTGAACCGGATCAAAGTGCTGGCCCAGCTGGATATCGGCGAGACCCGGCTGCCG
CAGGACGGCCGCTTCCGCGTGCGACTGGAGGGGCGCGATGTCGACATGCGGGTCTCCATCATGCCCAACGTGTTCGGCGA
GGATGCCGTCATCCGCTTGCTGGACAAGGCGCAGTTGCGCGGCGCATCGGAAACGCTCACGCTCGAGGCGCTGGGCTTCG
ACACCGCGGCCACCGCCACCATCCGCCGGCTGACCAAGGAGCCGCACGGCATGCTGCTGGTGACCGGCCCCACCGGCAGC
GGCAAGACCACCACGCTGTACGCCGCGCTCTCTGAAATCAACACCGGGCGCGACAAGATCATCACGATCGAAGACCCGGT
CGAATACGAGCTGTCGGGCATCCTGCAGATTCCCGTCAACGAAAAGAAGGGCCTGACCTTTGCCCGCGGCCTGCGCTCGA
TCCTGCGCCACGACCCGGACCAGATCCTCGTCGGTGAAATCCGCGACCCCGAGACGGCGGAGATTGCTGTGCAAGCCGCG
CTGACCGGGCACTTGGTCTTCACGTCCGTGCACGCGAACTCGGCACTCGACGTGGTCGGCCGCTTCCTGCACATGGGGGT
CGACCCCTACAACTTCATGTCGGCGCTGATCGGCATCGTGTCGCAGCGGTTGCTGCGCCTGAAATGCCCGGAATGCGCGC
CTGCTTCTCCGGATCCGGGCAGCCGGTCCGTCGGATGCCCAGCCTGTCGGTACACCGGGTACCGAGGTCGTACCGTTGTC
TGGGAAATCGTCCCCGTCAATGACACGATCCGTGAGCTCGTGATCCGGCGCGAGCCGCTGCGGCTGATCCGCGAGCAGAG
CCGACAGATGGGCGTGGTGTCGTTGCGCGACCAGGCGGTGCGCATGGTGGAGCGTGGCCTGACGACGTTTGAGGAAATCG
ACCGCGTGGTGTCGCCCAATGAATGA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(176-446)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(27-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Thermus thermophilus HB27

36.581

100

0.368
  pilB Legionella pneumophila strain ERS1305867

36.015

100

0.364
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

36.567

99.076

0.362