Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   LH646_RS27550 Genome accession   NZ_CP085039
Coordinates   6268512..6269930 (+) Length   472 a.a.
NCBI ID   WP_003948876.1    Uniprot ID   A0ABR4S2M5
Organism   Streptomyces sp. WA1-19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6263512..6274930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH646_RS27530 (LH646_27530) - 6264038..6264838 (+) 801 WP_411292344.1 hypothetical protein -
  LH646_RS27535 (LH646_27535) - 6264907..6265450 (-) 544 Protein_5443 hypothetical protein -
  LH646_RS27540 (LH646_27540) - 6265902..6267623 (-) 1722 WP_175457492.1 BACON domain-containing protein -
  LH646_RS27545 (LH646_27545) - 6267882..6268457 (+) 576 WP_030699876.1 dihydrofolate reductase family protein -
  LH646_RS27550 (LH646_27550) radA/sms 6268512..6269930 (+) 1419 WP_003948876.1 DNA repair protein RadA Machinery gene
  LH646_RS27555 (LH646_27555) disA 6270101..6271222 (+) 1122 WP_010645237.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  LH646_RS27560 (LH646_27560) - 6271305..6272114 (-) 810 WP_226965416.1 hypothetical protein -
  LH646_RS27565 (LH646_27565) - 6272471..6273220 (+) 750 WP_030699878.1 phosphatase PAP2 family protein -
  LH646_RS27570 (LH646_27570) - 6273333..6274385 (+) 1053 WP_047470995.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 49821.02 Da        Isoelectric Point: 8.0022

>NTDB_id=536480 LH646_RS27550 WP_003948876.1 6268512..6269930(+) (radA/sms) [Streptomyces sp. WA1-19]
MAARTKSAKERPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTSSALPIAQVDGKQATARPTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIDALSDHLYLTAETDLSAVL
GHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAARLGFTHALVPADPGKVPPGMKVVEVADMGDALRVLPRRRRAQSPASPQEAEERR

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=536480 LH646_RS27550 WP_003948876.1 6268512..6269930(+) (radA/sms) [Streptomyces sp. WA1-19]
ATGGCTGCCCGTACGAAATCCGCCAAGGAACGGCCGTCCTACCGGTGCACCGAGTGCGGCTGGCAGACGGCGAAGTGGCT
CGGCCGCTGCCCGGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCCGTCCGCACCACCGCCCCGGGGC
GGGTGACCAGCTCCGCCCTGCCCATCGCGCAGGTCGACGGCAAGCAGGCGACGGCCCGCCCGACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGTCTGGTGCCCGGCGCCGTGGTGCTGGTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACGCT
GCTGCTGGACGTCGCGGCGAAGGCCGCCTCGGACGAGCACCGCACGTTGTACGTCACCGGCGAGGAGTCGGCCAGCCAGG
TCCGGCTGCGCGCGGACCGGATCGACGCGCTCAGCGACCACCTCTATCTCACCGCCGAGACCGACCTCTCCGCCGTTCTC
GGCCATCTCGACGCGGTCAAGCCCTCGCTGCTGGTCCTGGACTCCGTGCAGACCGTCGCCTCCCCCGAGATCGACGGCGC
GCCCGGCGGCATGGCGCAGGTCAGGGAGGTCGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGCATGTCCACGCTCC
TGGTCGGCCACGTCACCAAGGACGGCGCCATCGCCGGCCCGCGCCTGCTGGAGCACCTGGTCGACGTGGTGCTCCACTTC
GAGGGCGACCGGCACGCCCGGCTCCGTCTGGTCCGCGGCGTCAAGAACCGCTACGGCACCACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCAGCGGCCTCTTCCTGACCCGCCGCGCCGAGCCGGTCCCGG
GCACCTGCCTGACGGTGACGCTGGAGGGCCGCCGCCCGCTGGTCGCCGAGGTCCAGGCGCTCACCGTCGACTCGCAGATC
CCCTCCCCGCGCCGGACCACCTCGGGCCTGGAGACCTCCCGGGTCTCGATGATGCTGGCGGTGCTGGAGCAGCGCGGCCG
CATCACCGCGCTCGGCAAGCGGGACATCTACTCGGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCCGCCGCCGACCTGG
CGGTGGCCCTGGCCCTGGCCAGCGCGGCGAGCGACACCCCGCTGCCGAAGAACCTGGTGGCGATCGGCGAGGTCGGTCTC
GCGGGCGAGGTCCGGCGGGTGACGGGCGTCCAGCGGCGGCTGGCGGAGGCGGCCCGGCTGGGCTTCACCCACGCCCTCGT
ACCGGCCGACCCGGGGAAGGTGCCGCCGGGGATGAAGGTGGTCGAAGTGGCCGACATGGGGGACGCGTTGCGGGTTCTGC
CGCGGCGGCGCCGGGCCCAGAGCCCGGCAAGCCCCCAGGAGGCGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

95.975

0.422
  radA Streptococcus mitis SK321

43.111

95.339

0.411
  radA Streptococcus mitis NCTC 12261

43.111

95.339

0.411
  radA Streptococcus pneumoniae Rx1

42.667

95.339

0.407
  radA Streptococcus pneumoniae D39

42.667

95.339

0.407
  radA Streptococcus pneumoniae R6

42.667

95.339

0.407
  radA Streptococcus pneumoniae TIGR4

42.667

95.339

0.407