Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LHL15_RS05725 Genome accession   NZ_CP084900
Coordinates   1187023..1187760 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain EC20     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1182023..1192760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHL15_RS05695 yfiL 1182181..1182546 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  LHL15_RS05700 aroF 1182756..1183826 (+) 1071 WP_072649798.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  LHL15_RS05705 tyrA 1183837..1184958 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  LHL15_RS05710 pheA 1185001..1186161 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  LHL15_RS05715 pheL 1186260..1186307 (-) 48 WP_010723158.1 phe operon leader peptide -
  LHL15_RS05720 raiA 1186411..1186752 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  LHL15_RS05725 comL 1187023..1187760 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  LHL15_RS05730 rluD 1187895..1188875 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LHL15_RS05735 yfiH 1188872..1189603 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  LHL15_RS05740 clpC 1189733..1192306 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=536368 LHL15_RS05725 WP_000197686.1 1187023..1187760(-) (comL) [Escherichia coli strain EC20]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=536368 LHL15_RS05725 WP_000197686.1 1187023..1187760(-) (comL) [Escherichia coli strain EC20]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376