Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LHV60_RS13505 Genome accession   NZ_CP084899
Coordinates   2742221..2742958 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain W3110-P     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2737221..2747958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHV60_RS13490 (LHV60_13400) clpC 2737675..2740248 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  LHV60_RS13495 (LHV60_13405) yfiH 2740378..2741109 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  LHV60_RS13500 (LHV60_13410) rluD 2741106..2742086 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LHV60_RS13505 (LHV60_13415) comL 2742221..2742958 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  LHV60_RS13510 (LHV60_13420) raiA 2743229..2743570 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  LHV60_RS13515 (LHV60_13425) pheL 2743674..2743721 (+) 48 WP_010723158.1 phe operon leader peptide -
  LHV60_RS13520 (LHV60_13430) pheA 2743820..2744980 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  LHV60_RS13525 (LHV60_13435) tyrA 2745023..2746144 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  LHV60_RS13530 (LHV60_13440) aroF 2746155..2747225 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  LHV60_RS13535 (LHV60_13445) yfiL 2747435..2747800 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=536296 LHV60_RS13505 WP_000197686.1 2742221..2742958(+) (comL) [Escherichia coli strain W3110-P]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=536296 LHV60_RS13505 WP_000197686.1 2742221..2742958(+) (comL) [Escherichia coli strain W3110-P]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376