Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I6K03_RS16955 Genome accession   NZ_CP069587
Coordinates   3577655..3578449 (+) Length   264 a.a.
NCBI ID   WP_011135741.1    Uniprot ID   Q7NVZ7
Organism   Chromobacterium violaceum strain FDAARGOS_1273     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3572655..3583449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K03_RS16925 (I6K03_16925) - 3572734..3573456 (-) 723 WP_081526588.1 metallophosphoesterase -
  I6K03_RS16930 (I6K03_16930) - 3573481..3574134 (-) 654 WP_043613811.1 HD domain-containing protein -
  I6K03_RS16935 (I6K03_16935) - 3574276..3575124 (-) 849 WP_081526589.1 GNAT family N-acetyltransferase -
  I6K03_RS16940 (I6K03_16940) - 3575121..3575732 (-) 612 WP_076226894.1 AraC family transcriptional regulator -
  I6K03_RS16945 (I6K03_16945) pgeF 3575838..3576575 (-) 738 WP_081526590.1 peptidoglycan editing factor PgeF -
  I6K03_RS16950 (I6K03_16950) rluD 3576565..3577656 (-) 1092 WP_011135740.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I6K03_RS16955 (I6K03_16955) comL 3577655..3578449 (+) 795 WP_011135741.1 outer membrane protein assembly factor BamD Machinery gene
  I6K03_RS16960 (I6K03_16960) - 3578517..3579548 (-) 1032 WP_081526591.1 NAD(P)H-dependent flavin oxidoreductase -
  I6K03_RS16965 (I6K03_16965) - 3579629..3579820 (+) 192 WP_011135743.1 hypothetical protein -
  I6K03_RS16970 (I6K03_16970) rpsB 3579970..3580701 (+) 732 WP_011135744.1 30S ribosomal protein S2 -
  I6K03_RS16975 (I6K03_16975) tsf 3580775..3581641 (+) 867 WP_048404821.1 translation elongation factor Ts -
  I6K03_RS16980 (I6K03_16980) pyrH 3581733..3582452 (+) 720 WP_011135746.1 UMP kinase -
  I6K03_RS16985 (I6K03_16985) frr 3582528..3583085 (+) 558 WP_011135747.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30267.42 Da        Isoelectric Point: 7.9695

>NTDB_id=535820 I6K03_RS16955 WP_011135741.1 3577655..3578449(+) (comL) [Chromobacterium violaceum strain FDAARGOS_1273]
MKRYVVAAMLVMVGLAGCATTETYDETRGWTVEKLYSEAHDELNSGNYTRAVKLYETLEARFPYGRYAQQAQMDLAYTHY
KDGEPELAIASADRFIKLHPTHPNLDYIYYLKGLVYYNDDSGLLAKWAGQDMSERDPRAAREAFAAFRELTTRFPSSSYA
PDAKAKMIRLVDALGGNEMHVARYYMKRGAYLAAANRAQGVVKDYANTKYPEEALAIMVAAYDKLQLPQLRDDARRVLAL
NYPQSQYLGKSWTVEEMPWWKLWK

Nucleotide


Download         Length: 795 bp        

>NTDB_id=535820 I6K03_RS16955 WP_011135741.1 3577655..3578449(+) (comL) [Chromobacterium violaceum strain FDAARGOS_1273]
ATGAAAAGATACGTTGTTGCGGCTATGTTGGTGATGGTGGGTCTTGCCGGGTGTGCGACCACGGAAACCTACGACGAGAC
GCGCGGCTGGACCGTGGAGAAGCTGTATTCGGAAGCTCACGACGAGTTGAACAGCGGCAATTATACCCGCGCAGTCAAGC
TGTATGAAACGCTGGAAGCGCGTTTCCCCTACGGCCGCTACGCGCAGCAGGCGCAGATGGATCTGGCCTACACCCATTAC
AAGGATGGCGAACCCGAACTGGCCATCGCCTCCGCCGACCGTTTCATCAAGCTGCATCCCACGCATCCGAACCTCGACTA
CATCTATTATCTGAAGGGTTTGGTGTATTACAACGACGATTCTGGCTTGCTGGCCAAATGGGCCGGCCAGGACATGAGCG
AGCGCGATCCGCGTGCCGCGCGCGAGGCGTTCGCCGCCTTCCGCGAGCTGACCACCCGCTTCCCCAGCAGCAGCTACGCG
CCGGATGCCAAGGCCAAGATGATCCGCCTGGTGGACGCCCTGGGCGGCAACGAAATGCACGTGGCGCGCTACTACATGAA
GCGCGGCGCCTATCTGGCCGCCGCCAATCGCGCGCAGGGCGTGGTCAAGGATTACGCCAACACCAAGTATCCGGAAGAGG
CGCTGGCCATCATGGTGGCCGCCTACGACAAGCTGCAGCTGCCGCAGCTGCGCGACGACGCGCGCCGCGTGCTGGCGCTC
AATTACCCGCAGAGCCAGTACCTGGGCAAGTCGTGGACGGTGGAGGAGATGCCGTGGTGGAAGCTGTGGAAATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(32-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7NVZ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

58.052

100

0.587
  comL Neisseria gonorrhoeae MS11

57.303

100

0.58