Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   I6J46_RS02875 Genome accession   NZ_CP069586
Coordinates   610945..611418 (-) Length   157 a.a.
NCBI ID   WP_204085548.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS_1216     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 605945..616418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J46_RS02860 (I6J46_02860) pilX 608584..609393 (-) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6J46_RS02865 (I6J46_02865) pilW 609390..610391 (-) 1002 WP_204085547.1 PilW family protein Machinery gene
  I6J46_RS02870 (I6J46_02870) pilV 610391..610951 (-) 561 WP_081037637.1 type IV pilus modification protein PilV Machinery gene
  I6J46_RS02875 (I6J46_02875) fimU 610945..611418 (-) 474 WP_204085548.1 pilus assembly FimT family protein Machinery gene
  I6J46_RS02880 (I6J46_02880) ispH 611588..612538 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6J46_RS02885 (I6J46_02885) gmk 612661..613290 (+) 630 WP_002116973.1 guanylate kinase -
  I6J46_RS02890 (I6J46_02890) rpoZ 613363..613641 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  I6J46_RS02895 (I6J46_02895) - 613680..613835 (+) 156 WP_014207816.1 hypothetical protein -
  I6J46_RS02900 (I6J46_02900) spoT 613851..615956 (+) 2106 WP_002116807.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16894.56 Da        Isoelectric Point: 7.7942

>NTDB_id=535764 I6J46_RS02875 WP_204085548.1 610945..611418(-) (fimU) [Acinetobacter pittii strain FDAARGOS_1216]
MRGIIPQDGFTLVELIVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=535764 I6J46_RS02875 WP_204085548.1 610945..611418(-) (fimU) [Acinetobacter pittii strain FDAARGOS_1216]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATAGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCCGCGCCATCTATGTCGAATTTATTAGAAAGTAAGCGACTAGATGGAAACCAACGAGACCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGACGTTTCTATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAACTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTGATAACCAATATCACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879