Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   I6J46_RS02865 Genome accession   NZ_CP069586
Coordinates   609390..610391 (-) Length   333 a.a.
NCBI ID   WP_204085547.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS_1216     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 604390..615391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J46_RS02855 (I6J46_02855) pilY1 604718..608572 (-) 3855 WP_204085546.1 PilC/PilY family type IV pilus protein Machinery gene
  I6J46_RS02860 (I6J46_02860) pilX 608584..609393 (-) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6J46_RS02865 (I6J46_02865) pilW 609390..610391 (-) 1002 WP_204085547.1 PilW family protein Machinery gene
  I6J46_RS02870 (I6J46_02870) pilV 610391..610951 (-) 561 WP_081037637.1 type IV pilus modification protein PilV Machinery gene
  I6J46_RS02875 (I6J46_02875) fimU 610945..611418 (-) 474 WP_204085548.1 pilus assembly FimT family protein Machinery gene
  I6J46_RS02880 (I6J46_02880) ispH 611588..612538 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6J46_RS02885 (I6J46_02885) gmk 612661..613290 (+) 630 WP_002116973.1 guanylate kinase -
  I6J46_RS02890 (I6J46_02890) rpoZ 613363..613641 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  I6J46_RS02895 (I6J46_02895) - 613680..613835 (+) 156 WP_014207816.1 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35729.34 Da        Isoelectric Point: 6.3332

>NTDB_id=535762 I6J46_RS02865 WP_204085547.1 609390..610391(-) (pilW) [Acinetobacter pittii strain FDAARGOS_1216]
MAHSFVSWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTASTATNNNNVNFVPNVGANTYIADTLLSRGAGDTVSTVSNHWKGLSNIQNSSDAAVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSAVATAQPTTVAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQISVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=535762 I6J46_RS02865 WP_204085547.1 609390..610391(-) (pilW) [Acinetobacter pittii strain FDAARGOS_1216]
ATGGCTCACTCATTTGTATCATGGAAGCAGCGAGGCTTTACATTAATTGAGCTGATGGTTGCATTGGCTTTAGGTCTAAT
TTTAGTAGCCGCGGCGACTCAATTATTTATTGGTGGACTTCTATCAAGCCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGTTTGGAATATATTGCCCGTGATATAAGGCTTCTAAATTATGGAAATGTAACCAACCCAATATTA
ACTGATACGACCCCCTGGGGCGGTGTTGTATTAACTGCTTCAACTGCAACCAATAACAACAATGTTAATTTTGTCCCGAA
TGTCGGAGCAAATACTTATATTGCTGACACATTACTTAGTCGTGGCGCAGGCGATACGGTGAGTACTGTGAGTAATCACT
GGAAAGGTCTTTCAAATATACAGAACAGTTCAGATGCTGCTGTGCAAAGTGATCAGCTGACTATCCAATTTATTGCACCT
ACGAATATGACCAATTGTGAAGGTGTAAATGTACTTGCAGGTGATTTAATTGTAGAGCGTTATTTTTTACGTCTGGATAG
CAATGGTAGTTCCCAGCAAGATTATGCACTTGCATGTGATGCAAATACTCCCTCTGCTGTAGCCACAGCTCAACCGACCA
CTGTTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGACCATTTCCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAGGCTGCCCGAGATGCCACGCCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATATCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTACATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

84.985

100

0.85