Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I6J46_RS02495 Genome accession   NZ_CP069586
Coordinates   531789..532418 (+) Length   209 a.a.
NCBI ID   WP_204085523.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS_1216     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 526789..537418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J46_RS02480 (I6J46_02480) - 527852..528835 (-) 984 WP_002117028.1 putative solute-binding protein -
  I6J46_RS02485 (I6J46_02485) - 528915..529730 (-) 816 WP_204085522.1 NAD-dependent epimerase/dehydratase family protein -
  I6J46_RS02490 (I6J46_02490) recG 529751..531796 (+) 2046 WP_046811835.1 ATP-dependent DNA helicase RecG -
  I6J46_RS02495 (I6J46_02495) comF 531789..532418 (+) 630 WP_204085523.1 ComF family protein Machinery gene
  I6J46_RS02500 (I6J46_02500) mutT 532420..532821 (-) 402 WP_002116701.1 NUDIX hydrolase -
  I6J46_RS02505 (I6J46_02505) - 532836..533417 (-) 582 WP_005067248.1 TIGR00730 family Rossman fold protein -
  I6J46_RS02510 (I6J46_02510) - 533576..534589 (+) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  I6J46_RS02515 (I6J46_02515) - 534662..534949 (-) 288 WP_005078357.1 STAS domain-containing protein -
  I6J46_RS02520 (I6J46_02520) - 534961..535602 (-) 642 WP_002116826.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  I6J46_RS02525 (I6J46_02525) - 535629..536309 (-) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  I6J46_RS02530 (I6J46_02530) mlaE 536309..537085 (-) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24479.70 Da        Isoelectric Point: 10.0756

>NTDB_id=535757 I6J46_RS02495 WP_204085523.1 531789..532418(+) (comF) [Acinetobacter pittii strain FDAARGOS_1216]
MFNFLNFQPLIQLFSPCSLCELGTREKYSLCKDCWEQLPWLKQTIQRNNLSVLVACNYAYPVNRIIQHFKYEQKVHYQIL
LGEIFKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIKRLNEHSQKGLTRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATLKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=535757 I6J46_RS02495 WP_204085523.1 531789..532418(+) (comF) [Acinetobacter pittii strain FDAARGOS_1216]
ATGTTTAATTTTTTAAACTTCCAACCTCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCACGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCTATCTGTTCTTG
TGGCCTGTAATTATGCTTATCCGGTTAACCGGATTATTCAGCACTTTAAATATGAACAAAAGGTACATTATCAGATCTTA
TTAGGTGAAATTTTCAAACAATTAAAATTTCCCAAGGTACAAGCGATCGTACCTATGCCCATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAATCATTACTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCAATCA
AACGTTTAAACGAGCACTCTCAAAAAGGACTTACTCGGCTAGAACGCTTTGAAAATATAGAACAACAATTTTTACCCCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACAGGAAGCTCTGTTCATGCGCTCAG
TCAAGCCCTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCGGCAACACTAAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.01

98.565

0.818
  comF Acinetobacter baumannii D1279779

82.039

98.565

0.809