Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   I6J35_RS11610 Genome accession   NZ_CP069567
Coordinates   2330108..2331457 (-) Length   449 a.a.
NCBI ID   WP_204107989.1    Uniprot ID   -
Organism   Staphylococcus condimenti strain FDAARGOS_1205     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2325108..2336457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J35_RS11585 (I6J35_11585) - 2325163..2325666 (-) 504 WP_037539356.1 DUF1643 domain-containing protein -
  I6J35_RS11590 (I6J35_11590) - 2325681..2325992 (-) 312 WP_002506254.1 DUF960 family protein -
  I6J35_RS11595 (I6J35_11595) - 2326079..2326429 (-) 351 WP_002506255.1 SAUGI family uracil-DNA glycosylase inhibitor -
  I6J35_RS11600 (I6J35_11600) - 2326991..2327920 (-) 930 WP_002506256.1 ketopantoate reductase family protein -
  I6J35_RS11605 (I6J35_11605) ccrB 2328458..2330086 (-) 1629 WP_002506257.1 cassette chromosome recombinase CcrB Machinery gene
  I6J35_RS11610 (I6J35_11610) ccrA 2330108..2331457 (-) 1350 WP_204107989.1 cassette chromosome recombinase CcrA Machinery gene
  I6J35_RS11615 (I6J35_11615) - 2331649..2331924 (-) 276 WP_002506259.1 hypothetical protein -
  I6J35_RS11620 (I6J35_11620) cch1 2331993..2333786 (-) 1794 WP_002506260.1 cassette chromosome replicative helicase -
  I6J35_RS11625 (I6J35_11625) ssb 2333806..2334036 (-) 231 WP_002506261.1 cassette chromosome ssDNA-binding protein -
  I6J35_RS11630 (I6J35_11630) - 2334283..2335824 (-) 1542 WP_204107990.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52074.14 Da        Isoelectric Point: 10.0740

>NTDB_id=535662 I6J35_RS11610 WP_204107989.1 2330108..2331457(-) (ccrA) [Staphylococcus condimenti strain FDAARGOS_1205]
MKQAIGYLRQSTLKQQSLAAQKQTIKALAKKHNIPHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYH
NGTFMIDTVKAPTIKAVFNYYLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
YEEAQVTRTQKQVKRKPSENQLKQKIKCPCCGSTLTNMTIRKTNHSLRYYVCPKNMNASRFACDFKGINAENIEKQVLES
CQKFFRDQQLYSKIKHAIEKQLKKQKMHNTNNTLTHEKLIEKLAQGTIDVETFREQSQSINLQNKPIQAISDIRIKASLQ
KVIQKSFTLNMLHPYIDEIHITKNKELSGIYLKDEPLNIVNQAVQSSTA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=535662 I6J35_RS11610 WP_204107989.1 2330108..2331457(-) (ccrA) [Staphylococcus condimenti strain FDAARGOS_1205]
ATGAAACAAGCAATTGGTTACTTACGTCAAAGTACACTCAAACAACAATCTCTAGCAGCACAGAAACAAACCATCAAGGC
ATTAGCCAAAAAGCATAATATTCCACACATCACCTTTTATAGCGATAAACAATCAGGACGTACTGATAAGCGCAATGGTT
ACCAACAAATTACTGAACTGATTCAACAAGGACAATGTGACGTATTATGTTGCTATCGTCTGAATCGACTTCATCGTAAT
CTAAAAAATGCATTAAAACTCATGAAATTATGTCAAAAATACCATGTTCATATCTTAAGCGTTCATGATGGCTATTTTGA
TATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAACTAGAATCCGATAATATAGGCGAAC
AAGTCAAAAATGGAATCAAAGAAAAAGCGAAACAAGGTAAAATGATTACAACACATGCACCATTTGGCTATCACTACCAT
AATGGAACATTCATGATAGACACAGTAAAAGCACCAACAATAAAAGCTGTGTTCAATTATTACCTTCAAGGTTATGGTTA
TAAAAAAATTGCACAATACTTAGAAGCTGATGATAAATTCATTAATCGTAAGCCCTATCAAGTGCGTAATATTATCCTTA
ACCCTAATTACTGTGGCCGTGTTATCAATCAATACGGACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTACCCGAACTCAGAAACAAGTCAAACGTAAGCCGTCAGAAAACCAACTCAAACAAAAAATAAA
ATGTCCTTGTTGTGGTTCAACCCTTACCAACATGACCATTAGAAAAACCAATCATTCATTACGTTATTATGTCTGTCCTA
AAAACATGAATGCATCACGTTTTGCATGTGACTTTAAAGGCATAAACGCTGAAAACATAGAAAAACAGGTCTTAGAATCT
TGCCAAAAATTCTTTCGAGACCAACAGCTCTATTCGAAAATCAAACACGCTATTGAGAAACAGCTCAAAAAACAAAAAAT
GCATAATACTAATAACACATTAACTCATGAAAAGCTCATTGAAAAATTAGCTCAAGGAACAATTGATGTAGAAACATTCA
GAGAACAGTCCCAATCAATTAATCTACAGAATAAACCTATACAAGCAATAAGTGATATTCGGATAAAAGCATCACTACAA
AAGGTTATACAGAAAAGTTTCACGTTAAACATGCTGCATCCCTATATTGATGAAATTCATATTACTAAAAATAAAGAACT
AAGCGGCATCTATTTAAAAGATGAGCCACTAAACATTGTTAATCAAGCGGTACAATCATCAACTGCCTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(170-249)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

83.893

99.555

0.835
  ccrA Staphylococcus aureus N315

71.715

100

0.717