Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   I6J35_RS11605 Genome accession   NZ_CP069567
Coordinates   2328458..2330086 (-) Length   542 a.a.
NCBI ID   WP_002506257.1    Uniprot ID   -
Organism   Staphylococcus condimenti strain FDAARGOS_1205     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2323458..2335086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J35_RS11575 (I6J35_11575) - 2324616..2324864 (+) 249 WP_002506251.1 hypothetical protein -
  I6J35_RS11580 (I6J35_11580) - 2324928..2325149 (-) 222 WP_002506252.1 hypothetical protein -
  I6J35_RS11585 (I6J35_11585) - 2325163..2325666 (-) 504 WP_037539356.1 DUF1643 domain-containing protein -
  I6J35_RS11590 (I6J35_11590) - 2325681..2325992 (-) 312 WP_002506254.1 DUF960 family protein -
  I6J35_RS11595 (I6J35_11595) - 2326079..2326429 (-) 351 WP_002506255.1 SAUGI family uracil-DNA glycosylase inhibitor -
  I6J35_RS11600 (I6J35_11600) - 2326991..2327920 (-) 930 WP_002506256.1 ketopantoate reductase family protein -
  I6J35_RS11605 (I6J35_11605) ccrB 2328458..2330086 (-) 1629 WP_002506257.1 cassette chromosome recombinase CcrB Machinery gene
  I6J35_RS11610 (I6J35_11610) ccrA 2330108..2331457 (-) 1350 WP_204107989.1 cassette chromosome recombinase CcrA Machinery gene
  I6J35_RS11615 (I6J35_11615) - 2331649..2331924 (-) 276 WP_002506259.1 hypothetical protein -
  I6J35_RS11620 (I6J35_11620) cch1 2331993..2333786 (-) 1794 WP_002506260.1 cassette chromosome replicative helicase -
  I6J35_RS11625 (I6J35_11625) ssb 2333806..2334036 (-) 231 WP_002506261.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62679.51 Da        Isoelectric Point: 9.6318

>NTDB_id=535661 I6J35_RS11605 WP_002506257.1 2328458..2330086(-) (ccrB) [Staphylococcus condimenti strain FDAARGOS_1205]
MQQLKQKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCNFHHFEVKDIYADRGISGKSMNRPELQRMLKDANEGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDNKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSINSITYILVNPFYIGKIQFAK
YKDWNEKRRKGLNDTPVVADGKHSPIISQELWDKVHSRMKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRAEVIEKYVMDQILEIVKSDKVLKQVVERVNQDNQVDVAGLNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLTSALKATIHQYETQLNDITNQMNQLKHQQNQEKTSYDTKQIAALLRRIFQNIESMDKSQLK
ALYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPKTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=535661 I6J35_RS11605 WP_002506257.1 2328458..2330086(-) (ccrB) [Staphylococcus condimenti strain FDAARGOS_1205]
ATGCAACAACTCAAACAAAAACGTGTCGGTATTTATGTCCGTGTATCCACTGAAATGCAAAGTACAGAAGGTTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATATTGTAACTTTCATCATTTCGAGGTCAAAGATATATACGCCGATCGTGGTA
TCTCAGGAAAATCTATGAACCGTCCTGAGCTCCAACGTATGTTGAAGGATGCGAATGAAGGTCATATCGATTGTGTCATG
GTGTACAAAACAAACCGATTGGCACGTAATACATCAGACTTACTCAAAATTGTCGAGGATTTGCATAAACAGAACGTCGA
ATTTTTCAGTTTGTCTGAACGTATGGAAGTCAACACTTCTTCGGGTAAACTCATGTTACAAATACTTGCGAGCTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAATGTATTCATGGGCCAAACTAGACGTGCACAAGAAGGCTACTATCAAGGGAAT
TTGCCACTAGGATATGACAAAATACCTGATAATAAACACGAACTGATGATTAATCAACATGAAGCGAATATCGTGAAATA
TATATTCGAATCTTATGCCAAAGGACATGGTTATCGTAAAATTGCCAATGCCCTCAATCACAAAGGATATGTTACTAAAA
AAGGTAATCCTTTTAGCATTAATTCAATAACCTATATCTTAGTCAATCCATTCTACATTGGTAAAATCCAATTTGCGAAG
TACAAAGATTGGAATGAAAAGCGACGTAAAGGTCTCAATGATACTCCTGTAGTAGCTGACGGGAAGCATTCACCTATCAT
TAGTCAAGAACTATGGGATAAAGTACATTCACGTATGAAACAAGTTAGTCAAAAACCTCAAGTTCATGGAAAAGGAACCA
ATCTATTAACGGGTATTATTCACTGCCCACAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGCTATTATTCTTGTAGTAACTTCCGAAACAAAGGTTCAAAGGTATGTTCTGCGAATAGTGT
TAGAGCTGAGGTGATTGAGAAATACGTCATGGATCAAATACTTGAAATTGTCAAAAGCGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGATAATCAAGTCGATGTAGCTGGACTCAATCATGATATTGCCTATAAGCAACAACAATTTGAT
GAAATAAACACTAAACTAAAAAATCTAATTCAAACCATCGAAGATAATCCAGACTTAACATCTGCATTGAAAGCAACTAT
TCATCAATATGAAACACAACTCAATGACATTACAAATCAAATGAATCAGCTCAAGCACCAACAAAACCAAGAAAAAACAT
CTTACGATACGAAACAAATCGCTGCCCTATTACGACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAA
GCTTTGTACCTAACGGTTATTGACCGTATTGACATTCGTAAAGATGAGAATCATAAAAAGCAATTCTACGTTACACTAAA
ACTTAATAATGAAATTATTAAACAACTTTTCAATAATAATAATCTAGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTAAAACACTCTACTTTCAAATCTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-281)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

86.347

100

0.863