Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6J35_RS02740 Genome accession   NZ_CP069567
Coordinates   560284..560715 (+) Length   143 a.a.
NCBI ID   WP_047132356.1    Uniprot ID   A0A143PDW9
Organism   Staphylococcus condimenti strain FDAARGOS_1205     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 555284..565715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J35_RS02705 (I6J35_02705) atpD 555323..556738 (+) 1416 WP_047132349.1 F0F1 ATP synthase subunit beta -
  I6J35_RS02710 (I6J35_02710) - 556759..557166 (+) 408 WP_047132350.1 F0F1 ATP synthase subunit epsilon -
  I6J35_RS02715 (I6J35_02715) - 557346..557579 (+) 234 WP_047132351.1 DUF1146 family protein -
  I6J35_RS02720 (I6J35_02720) murA 557690..558961 (+) 1272 WP_047132352.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I6J35_RS13370 - 559053..559160 (+) 108 WP_420877328.1 hypothetical protein -
  I6J35_RS02730 (I6J35_02730) fabZ 559164..559601 (+) 438 WP_047132354.1 3-hydroxyacyl-ACP dehydratase FabZ -
  I6J35_RS02735 (I6J35_02735) - 559652..560095 (-) 444 WP_047132355.1 YwpF family protein -
  I6J35_RS02740 (I6J35_02740) ssb 560284..560715 (+) 432 WP_047132356.1 single-stranded DNA-binding protein Machinery gene
  I6J35_RS02745 (I6J35_02745) - 561244..561879 (+) 636 WP_047132357.1 transglycosylase family protein -
  I6J35_RS02750 (I6J35_02750) - 562092..562766 (+) 675 WP_047132358.1 transglycosylase family protein -
  I6J35_RS02755 (I6J35_02755) - 562973..563662 (+) 690 WP_047132359.1 transglycosylase family protein -
  I6J35_RS02760 (I6J35_02760) tenA 563937..564623 (+) 687 WP_047132360.1 thiaminase II -
  I6J35_RS02765 (I6J35_02765) thiD 564620..565441 (+) 822 WP_047132361.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16040.98 Da        Isoelectric Point: 7.2729

>NTDB_id=535632 I6J35_RS02740 WP_047132356.1 560284..560715(+) (ssb) [Staphylococcus condimenti strain FDAARGOS_1205]
MLNKIVIVGRLTRNPQLAEKEGSEIASFSVATERNYNYQGQTQQAVDYIFCKAYGKIAINIAKYTKKGSLVGITGHMRSY
KYEKDKQTHFMTELVVETIKFISNPNSNESSSSNQPTITDDFEGSPALQDHQLLSVTTDPQNQ

Nucleotide


Download         Length: 432 bp        

>NTDB_id=535632 I6J35_RS02740 WP_047132356.1 560284..560715(+) (ssb) [Staphylococcus condimenti strain FDAARGOS_1205]
TTGTTAAATAAAATCGTAATTGTAGGACGATTAACTCGTAACCCTCAGTTAGCAGAAAAGGAGGGGAGTGAAATTGCCAG
TTTTAGTGTAGCCACAGAAAGAAATTATAATTATCAAGGTCAAACACAGCAAGCTGTTGATTATATTTTTTGTAAAGCGT
ATGGAAAGATAGCAATCAATATTGCTAAATACACTAAAAAAGGATCTCTTGTGGGTATTACGGGTCACATGCGTTCTTAT
AAGTATGAAAAAGATAAACAAACACATTTTATGACTGAATTAGTTGTTGAAACAATCAAATTTATTTCAAATCCAAACTC
TAATGAAAGTTCCTCTTCAAATCAACCTACTATAACTGATGACTTTGAAGGTAGCCCTGCCTTACAAGACCATCAGTTGC
TCTCAGTTACAACTGATCCTCAAAATCAGTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143PDW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

54.412

95.105

0.517
  ssb Staphylococcus aureus MW2

53.676

95.105

0.51