Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   I6J75_RS08940 Genome accession   NZ_CP069565
Coordinates   1774918..1775604 (+) Length   228 a.a.
NCBI ID   WP_001792568.1    Uniprot ID   A0A133PXY3
Organism   Staphylococcus aureus strain FDAARGOS_1245     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1769918..1780604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J75_RS08905 (I6J75_08905) yqeH 1770445..1771545 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  I6J75_RS08910 (I6J75_08910) aroE 1771559..1772365 (+) 807 WP_000666761.1 shikimate dehydrogenase -
  I6J75_RS08915 (I6J75_08915) yhbY 1772369..1772659 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  I6J75_RS08920 (I6J75_08920) nadD 1772662..1773231 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  I6J75_RS08925 (I6J75_08925) yqeK 1773221..1773805 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  I6J75_RS08930 (I6J75_08930) rsfS 1773806..1774159 (+) 354 WP_001088022.1 ribosome silencing factor -
  I6J75_RS08935 (I6J75_08935) - 1774162..1774878 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  I6J75_RS08940 (I6J75_08940) comEA 1774918..1775604 (+) 687 WP_001792568.1 ComEA family DNA-binding protein Machinery gene
  I6J75_RS08945 (I6J75_08945) - 1775696..1776157 (+) 462 WP_000439693.1 ComE operon protein 2 -
  I6J75_RS08950 (I6J75_08950) comEC 1776162..1778363 (+) 2202 WP_001548978.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  I6J75_RS08955 (I6J75_08955) holA 1778420..1779394 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  I6J75_RS08960 (I6J75_08960) rpsT 1779439..1779690 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=535611 I6J75_RS08940 WP_001792568.1 1774918..1775604(+) (comEA) [Staphylococcus aureus strain FDAARGOS_1245]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=535611 I6J75_RS08940 WP_001792568.1 1774918..1775604(+) (comEA) [Staphylococcus aureus strain FDAARGOS_1245]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PXY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969