Detailed information NTG0535562

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LG939_RS06170
• Genome accession: NZ_CP084738
• Coordinates: 1308657..1309538 (-)
• Length: 293 a.a.
• NCBI ID: WP_029240316.1
• Uniprot ID: A0ABX7ZX66
• Organism: Ralstonia pseudosolanacearum strain RS639
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1303657..1314538

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LG939_RS06140 (LG939_06165)	argJ	1304367..1305596 (+)	1230	WP_011002739.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
LG939_RS06145 (LG939_06170)	-	1305612..1306496 (+)	885	WP_019718219.1	ATP-binding protein	-
LG939_RS06150 (LG939_06175)	-	1306474..1306935 (+)	462	WP_023470258.1	NUDIX domain-containing protein	-
LG939_RS06155 (LG939_06180)	yacG	1306928..1307143 (-)	216	WP_011002736.1	DNA gyrase inhibitor YacG	-
LG939_RS06160 (LG939_06185)	zapD	1307154..1307912 (-)	759	WP_016723794.1	cell division protein ZapD	-
LG939_RS06165 (LG939_06190)	coaE	1308030..1308644 (-)	615	WP_019718221.1	dephospho-CoA kinase	-
LG939_RS06170 (LG939_06195)	pilD	1308657..1309538 (-)	882	WP_029240316.1	A24 family peptidase	Machinery gene
LG939_RS06175 (LG939_06200)	pilC	1309541..1310806 (-)	1266	WP_019718222.1	type II secretion system F family protein	Machinery gene
LG939_RS06180 (LG939_06205)	pilF	1310851..1312578 (-)	1728	WP_020832718.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LG939_RS06185 (LG939_06210)	-	1312826..1314103 (-)	1278	WP_016723792.1	HlyC/CorC family transporter	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31573.54 Da
• Isoelectric Point: 8.3415

>NTDB_id=535562 LG939_RS06170 WP_029240316.1 1308657..1309538(-) (pilD) [Ralstonia pseudosolanacearum strain RS639]
MPGMFVIPTLAQLPAWFVIGAGTLLGLLVGSFLNVVIHRLPRMIEREEANYIAELRNEPLPHPEPYNLVVPRSACPSCGH
QIKAVENIPVLSWLALRGRCSACKTPISWRYPAVELVTGVLTGACLWHFGPTWVAVASAALLWFLIAGSMIDADTQLLPD
AITQPLLWLGLLVNLFSMFARLPDAVIGATAGYLFLWAIYWAYKLLRGREGMGYGDFKLMGALGAWFGWQALPLLVLLSS
VVGLVFGVVRIARGATSESPFSFGPFIAGAGVIALLAGPQLVALTGLAPLLAR

Nucleotide

• Length: 882 bp

>NTDB_id=535562 LG939_RS06170 WP_029240316.1 1308657..1309538(-) (pilD) [Ralstonia pseudosolanacearum strain RS639]
ATGCCCGGAATGTTCGTCATTCCCACGCTGGCGCAACTGCCGGCGTGGTTCGTGATCGGCGCGGGGACGCTGCTGGGCTT
GCTGGTCGGCAGCTTCCTCAACGTGGTGATTCACCGCCTGCCGCGCATGATCGAGCGCGAAGAGGCCAACTACATCGCCG
AGCTGCGCAACGAACCGCTGCCGCATCCCGAGCCGTACAACCTGGTCGTGCCGCGCTCGGCCTGCCCGTCGTGCGGCCAC
CAGATCAAGGCGGTCGAGAACATCCCGGTGCTGAGCTGGCTGGCGTTGCGCGGCCGCTGCAGCGCCTGCAAGACCCCCAT
CTCCTGGCGCTATCCCGCCGTGGAGCTGGTGACCGGCGTGCTGACCGGCGCCTGCTTGTGGCACTTCGGACCGACCTGGG
TAGCGGTGGCCTCGGCCGCGCTGCTGTGGTTCCTGATCGCCGGCTCGATGATCGACGCCGACACGCAACTCCTGCCCGAT
GCCATCACCCAGCCGCTGCTGTGGCTCGGCCTGCTGGTGAACCTGTTCAGCATGTTCGCGCGGCTGCCGGACGCGGTAAT
CGGCGCGACGGCGGGGTATCTGTTCCTGTGGGCCATCTACTGGGCCTATAAGCTCCTGCGCGGCCGGGAAGGCATGGGCT
ACGGCGACTTCAAGCTGATGGGCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCGCTGCCGCTGCTGGTGCTGCTGTCGTCG
GTGGTCGGCCTGGTGTTCGGGGTGGTGCGCATCGCGCGCGGCGCCACGAGCGAATCGCCGTTCTCGTTCGGCCCGTTCAT
CGCGGGTGCCGGCGTGATCGCGCTGCTGGCCGGCCCGCAACTGGTGGCGCTGACGGGGCTCGCGCCACTGCTGGCGCGGT
AA

Domains

Predicted by InterProScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (24-129)

• Type IV leader peptidase family (Peptidase_A24) (140-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.453	90.444	0.474
pilD	Vibrio campbellii strain DS40M4	48.736	94.539	0.461
pilD	Neisseria gonorrhoeae MS11	48.881	91.468	0.447
pilD	Acinetobacter nosocomialis M2	45.865	90.785	0.416
pilD	Acinetobacter baumannii D1279779	45.865	90.785	0.416