Detailed information NTG0535558

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: LG939_RS04435
• Genome accession: NZ_CP084738
• Coordinates: 940184..941653 (+)
• Length: 489 a.a.
• NCBI ID: WP_020832941.1
• Uniprot ID: -
• Organism: Ralstonia pseudosolanacearum strain RS639
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 935184..946653

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LG939_RS04420 (LG939_04445)	-	936338..937858 (+)	1521	WP_016724410.1	aldehyde dehydrogenase family protein	-
LG939_RS04425 (LG939_04450)	-	937942..939336 (+)	1395	WP_020832943.1	ethanolamine ammonia-lyase subunit EutB	-
LG939_RS04430 (LG939_04455)	eutC	939345..940157 (+)	813	WP_086005437.1	ethanolamine ammonia-lyase subunit EutC	-
LG939_RS04435 (LG939_04460)	sbcB	940184..941653 (+)	1470	WP_020832941.1	exodeoxyribonuclease I	Machinery gene
LG939_RS04440 (LG939_04465)	-	941767..943133 (+)	1367	WP_086005428.1	IS3 family transposase	-

Sequence

Protein

• Length: 489 a.a.
• Molecular weight: 55638.66 Da
• Isoelectric Point: 5.0498

>NTDB_id=535558 LG939_RS04435 WP_020832941.1 940184..941653(+) (sbcB) [Ralstonia pseudosolanacearum strain RS639]
MPASLRCPTRLTVTHTFFWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLITGITPQQC
RRQGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEITRHLFWRNLIDPYAREWQNTCGRWDLLDVVRTTWALRPDGVEW
PKNGDGKPSFKLEHLSQANGLQHEAAHDALSDVRATIALARRVRAAQPRLFDFCFALRKKERVLAEIGDASRPLLHVSGM
YGVERGCLAVVWPLGWHPTNKNELLVWDLACDPAGLFDLGVDTIRERLFTRSADLTEGTTRLPIKSIHINKSPIVIGNLK
TLQPAQAERWGIDFAVIERHAGIAQGAPDLRETWRQVYARELEPIEDVDQNLYGGFVGNDDRRTLNELRTLSGEQLAQLH
PDFADARLPELLFRYRARNFPDTLTEDEHEQWEQLRAERLFEGRDGYLTLDAYAERIEQLAAEAADKGDARAEGILSALY
DYAEMVTPE

Nucleotide

• Length: 1470 bp

>NTDB_id=535558 LG939_RS04435 WP_020832941.1 940184..941653(+) (sbcB) [Ralstonia pseudosolanacearum strain RS639]
ATGCCGGCATCTTTGCGATGCCCAACCCGCCTGACCGTGACCCACACCTTCTTCTGGCACGACTACGAAACCTTCGGCGC
CGTGCCGCGCCGCGATCGCCCGGCCCAGTTCGCCGGCATCCGTACCGACGCCGAGCTCAACGAGATCGGCGAACCGGTCG
AGCTGTTCTGCCAGCCGTCCAACGACTGGCTGCCCGACCCGGTGTCGTGCCTGATCACCGGCATCACGCCGCAGCAGTGC
CGCCGGCAGGGTATCCCCGAGCACCGTTTCGCGCAGGCCATCGAGCGCGAGCTGGCCACGCCCGGCACCATCGGCGTCGG
CTATAACTCCATCCGCTTCGACGATGAGATCACGCGCCACCTGTTCTGGCGCAACCTGATCGATCCGTATGCGCGCGAAT
GGCAGAACACGTGCGGCCGATGGGATCTGCTCGATGTGGTGCGCACCACCTGGGCGCTGCGCCCGGACGGCGTCGAATGG
CCGAAGAACGGCGACGGCAAGCCCAGCTTCAAGCTGGAGCACCTGTCGCAGGCCAACGGCCTGCAGCACGAAGCCGCACA
CGATGCGCTGTCGGATGTGCGGGCCACCATCGCGCTGGCCCGGCGGGTCCGCGCCGCGCAGCCCCGCCTGTTCGATTTCT
GCTTCGCGCTGCGCAAGAAGGAGCGCGTGCTGGCCGAGATCGGCGACGCGTCGCGGCCGTTGCTGCACGTCTCGGGCATG
TACGGCGTGGAGCGGGGCTGCCTGGCGGTAGTGTGGCCGCTGGGCTGGCACCCGACCAACAAGAACGAACTGCTGGTGTG
GGACCTCGCCTGCGATCCGGCCGGGCTGTTCGACCTCGGCGTTGACACCATCCGCGAGCGCCTGTTCACGCGCAGCGCCG
ATCTGACCGAGGGCACCACGCGCTTGCCCATCAAGTCGATCCACATCAACAAGTCGCCCATCGTCATCGGCAACCTGAAG
ACGCTGCAGCCCGCGCAGGCCGAGCGCTGGGGCATCGACTTCGCGGTCATCGAGCGTCATGCCGGTATCGCCCAAGGGGC
GCCCGATCTGCGCGAAACGTGGCGCCAGGTCTACGCCCGCGAGCTGGAGCCGATCGAAGACGTGGACCAGAATCTCTACG
GCGGCTTCGTCGGCAATGACGACCGCCGCACGCTCAACGAACTGCGCACGCTTTCGGGCGAGCAGCTCGCGCAGCTGCAC
CCGGACTTCGCCGATGCGCGCCTGCCCGAACTGCTGTTCCGCTACCGCGCACGCAATTTCCCCGACACGCTCACGGAAGA
CGAGCACGAGCAGTGGGAACAACTGCGCGCCGAGCGTCTCTTCGAAGGCCGCGATGGCTACCTGACGCTGGATGCCTATG
CCGAGCGCATCGAGCAACTGGCGGCCGAGGCGGCGGATAAAGGCGATGCGCGTGCCGAAGGCATCCTCTCGGCGCTGTAC
GACTACGCTGAGATGGTGACGCCGGAATAA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (218-484)

• Exonuclease (RNase_T) (19-199)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	47.257	96.933	0.458