Detailed information NTG0535399

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: I6J77_RS13975
• Genome accession: NZ_CP069535
• Coordinates: 3064805..3066199 (+)
• Length: 464 a.a.
• NCBI ID: WP_204109461.1
• Uniprot ID: -
• Organism: Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3059805..3071199

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J77_RS13960 (I6J77_13960)	sucD	3060760..3061632 (-)	873	WP_204109459.1	succinate--CoA ligase subunit alpha	-
I6J77_RS13965 (I6J77_13965)	sucC	3061647..3062810 (-)	1164	WP_204109460.1	ADP-forming succinate--CoA ligase subunit beta	-
I6J77_RS13970 (I6J77_13970)	-	3063098..3064747 (+)	1650	WP_007808370.1	PAS domain-containing sensor histidine kinase	-
I6J77_RS13975 (I6J77_13975)	pilR	3064805..3066199 (+)	1395	WP_204109461.1	sigma-54 dependent transcriptional regulator	Regulator
I6J77_RS13980 (I6J77_13980)	-	3066230..3067771 (-)	1542	WP_204109462.1	response regulator	-
I6J77_RS13985 (I6J77_13985)	-	3067836..3068282 (-)	447	WP_204109463.1	response regulator	-
I6J77_RS13990 (I6J77_13990)	-	3068279..3070072 (-)	1794	WP_204109464.1	ATP-binding protein	-

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 49757.94 Da
• Isoelectric Point: 5.8302

>NTDB_id=535399 I6J77_RS13975 WP_204109461.1 3064805..3066199(+) (pilR) [Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247]
MTAQTVLVIDDERDIRELLTITLGRMDLQVDAVGTVGDARRALAERTYDLCFTDMRLPDGNGQEVIELIASEHPDMPVAM
ITAYGNVDAAVNALKAGAFDFVSKPVDIQMLRGLVRTALRLAEEKRNGGATAAPGDGGNRLIGDSAAMQQVRATIGKLAR
NQAPVYIAGESGVGKELVARLIHEQGPRASGPFVPVNCGAIPSELMESEFFGHRKGSFTGAGADKEGLFQAAQGGTLFLD
EVAELPLHMQVKLLRAIQEKAVRPIGGRDEIPVDVRILSATHKNLGQLVEQGQFRQDLFYRINVIELRVPPLRERRGDVP
QLSAFILKALAGKSGEPVGQLAPAARDALAAYDFPGNVRELENVLERAMAMCDGNTIEAVDLMLPQRSARVGTEQLAGTT
ATASAPAAAAAGADGGLDDYISNLERTAIVKALEESRYNKTAAARKLGITFRALRYKLKKLGID

Nucleotide

• Length: 1395 bp

>NTDB_id=535399 I6J77_RS13975 WP_204109461.1 3064805..3066199(+) (pilR) [Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247]
ATGACCGCACAGACCGTACTGGTCATCGACGATGAACGCGACATTCGCGAGCTGCTGACGATCACGCTGGGCCGCATGGA
CCTGCAGGTCGATGCAGTGGGTACGGTCGGTGATGCACGCCGCGCCCTGGCCGAGCGCACGTACGATCTCTGCTTCACCG
ACATGCGCCTGCCCGACGGCAACGGACAGGAAGTGATCGAGCTGATCGCCAGCGAACATCCGGACATGCCGGTGGCGATG
ATCACCGCCTATGGCAACGTCGACGCCGCGGTCAATGCGCTGAAGGCTGGCGCCTTCGACTTCGTCTCCAAGCCGGTCGA
CATCCAGATGCTGCGCGGACTGGTCCGCACCGCCCTGCGCCTGGCCGAGGAAAAACGCAACGGCGGCGCGACTGCTGCGC
CCGGCGATGGCGGCAACCGGCTGATCGGCGATTCGGCGGCGATGCAGCAGGTGCGCGCCACCATCGGCAAGCTGGCACGC
AACCAGGCGCCGGTGTACATCGCCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCCCGGCTGATCCACGAGCAGGGTCC
CCGCGCCAGTGGACCGTTCGTGCCGGTCAACTGCGGCGCGATTCCGTCCGAGCTGATGGAAAGCGAATTCTTCGGCCATC
GCAAGGGCAGCTTCACCGGCGCCGGCGCCGACAAGGAAGGCCTGTTCCAGGCCGCCCAGGGCGGCACGCTGTTCCTCGAC
GAAGTGGCCGAGCTGCCGCTGCACATGCAGGTGAAACTGCTGCGCGCGATCCAGGAAAAGGCGGTACGCCCGATCGGCGG
CCGCGACGAGATTCCGGTCGACGTGCGCATCCTCTCGGCCACCCACAAGAACCTGGGCCAGCTGGTCGAGCAGGGCCAGT
TCCGCCAGGACCTGTTCTACCGCATCAACGTGATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGCCGTGGCGACGTGCCG
CAGCTGTCGGCCTTCATCCTCAAGGCGCTGGCCGGCAAGAGCGGCGAGCCGGTAGGCCAGCTGGCACCGGCCGCACGCGA
TGCACTGGCGGCCTATGACTTCCCCGGCAACGTGCGCGAGCTGGAAAACGTGCTCGAACGCGCGATGGCGATGTGCGACG
GCAACACCATCGAGGCGGTCGACCTGATGCTGCCCCAGCGCAGCGCCCGCGTCGGCACCGAGCAGCTGGCCGGCACCACG
GCGACGGCAAGCGCCCCGGCTGCGGCCGCTGCGGGCGCGGACGGCGGCCTGGACGACTACATCAGCAATCTCGAGCGCAC
CGCGATCGTCAAGGCGCTGGAAGAATCCCGTTACAACAAGACCGCGGCCGCCCGCAAACTCGGCATCACCTTCCGCGCCC
TGCGCTACAAGCTGAAGAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (141-307)

• Bacterial regulatory protein, Fis family (HTH_8) (422-461)

• Response regulator receiver domain (Response_reg) (6-114)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	61.194	100	0.619
pilR	Acinetobacter baumannii strain A118	47.186	99.569	0.47