Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   I6J77_RS04270 Genome accession   NZ_CP069535
Coordinates   985533..985943 (+) Length   136 a.a.
NCBI ID   WP_274378300.1    Uniprot ID   -
Organism   Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 980533..990943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J77_RS04245 (I6J77_04245) - 981309..982235 (-) 927 WP_204110694.1 aspartate carbamoyltransferase catalytic subunit -
  I6J77_RS04250 (I6J77_04250) ruvX 982265..982714 (-) 450 WP_056717814.1 Holliday junction resolvase RuvX -
  I6J77_RS04255 (I6J77_04255) - 982711..983280 (-) 570 WP_056717815.1 YqgE/AlgH family protein -
  I6J77_RS04260 (I6J77_04260) - 983334..984203 (-) 870 WP_056717816.1 energy transducer TonB -
  I6J77_RS04265 (I6J77_04265) gshB 984200..985177 (-) 978 WP_204110695.1 glutathione synthase -
  I6J77_RS04270 (I6J77_04270) pilG 985533..985943 (+) 411 WP_274378300.1 PleD family two-component system response regulator Regulator
  I6J77_RS04275 (I6J77_04275) - 985966..986337 (+) 372 WP_007809635.1 response regulator -
  I6J77_RS04280 (I6J77_04280) - 986334..986873 (+) 540 WP_056717819.1 chemotaxis protein CheW -
  I6J77_RS04285 (I6J77_04285) - 987001..989031 (+) 2031 WP_056717820.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14988.42 Da        Isoelectric Point: 8.5130

>NTDB_id=535388 I6J77_RS04270 WP_274378300.1 985533..985943(+) (pilG) [Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247]
MNLNVSANDLAGLKVMVIDDSKTIRRTAETLLKKEGCDVLTAVDGFEALAKISDQKPAIIFVDIMMPRLDGYQTCALIKN
NPQFRATPVIMLSSKDGLFDKARGRIVGAEQYLTKPFTRDELLGAIHRHVSTVSSH

Nucleotide


Download         Length: 411 bp        

>NTDB_id=535388 I6J77_RS04270 WP_274378300.1 985533..985943(+) (pilG) [Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247]
GTGAATTTGAACGTGAGTGCTAACGATTTGGCTGGTCTCAAGGTCATGGTGATCGATGACTCGAAGACCATCCGCCGCAC
GGCCGAGACCCTTCTGAAGAAAGAGGGCTGCGACGTGCTGACTGCGGTCGACGGGTTCGAGGCCCTGGCCAAGATCTCCG
ACCAGAAGCCGGCGATCATCTTCGTCGACATCATGATGCCGCGGCTGGACGGCTATCAGACCTGCGCGCTGATCAAGAAC
AACCCCCAGTTCCGCGCCACGCCGGTGATCATGCTGTCCTCCAAGGACGGCCTCTTCGACAAGGCCCGCGGCCGCATCGT
GGGTGCCGAACAGTATCTGACCAAGCCGTTCACGCGTGACGAGCTGCTTGGTGCCATCCATCGCCATGTCAGCACGGTAT
CGAGCCACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(15-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

73.171

90.441

0.662
  vicR Streptococcus mutans UA159

41.88

86.029

0.36