Detailed information NTG0535387

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: I6J77_RS04230
• Genome accession: NZ_CP069535
• Coordinates: 977584..978753 (+)
• Length: 389 a.a.
• NCBI ID: WP_204110692.1
• Uniprot ID: -
• Organism: Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 972584..983753

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J77_RS04210 (I6J77_04210)	-	972925..973734 (+)	810	WP_204110689.1	cobalamin-binding protein	-
I6J77_RS04215 (I6J77_04215)	-	974613..975188 (-)	576	WP_204110690.1	YggT family protein	-
I6J77_RS04220 (I6J77_04220)	proC	975185..976009 (-)	825	WP_204110691.1	pyrroline-5-carboxylate reductase	-
I6J77_RS04225 (I6J77_04225)	pilT	976392..977429 (+)	1038	WP_007809667.1	type IV pilus twitching motility protein PilT	Machinery gene
I6J77_RS04230 (I6J77_04230)	pilU	977584..978753 (+)	1170	WP_204110692.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
I6J77_RS04235 (I6J77_04235)	-	978836..979204 (-)	369	WP_204110693.1	BON domain-containing protein	-
I6J77_RS04240 (I6J77_04240)	-	979443..981224 (-)	1782	WP_040673521.1	hypothetical protein	-
I6J77_RS04245 (I6J77_04245)	-	981309..982235 (-)	927	WP_204110694.1	aspartate carbamoyltransferase catalytic subunit	-
I6J77_RS04250 (I6J77_04250)	ruvX	982265..982714 (-)	450	WP_056717814.1	Holliday junction resolvase RuvX	-
I6J77_RS04255 (I6J77_04255)	-	982711..983280 (-)	570	WP_056717815.1	YqgE/AlgH family protein	-

Sequence

Protein

• Length: 389 a.a.
• Molecular weight: 43286.77 Da
• Isoelectric Point: 6.7734

>NTDB_id=535387 I6J77_RS04230 WP_204110692.1 977584..978753(+) (pilU) [Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247]
MSDFDFTSFLKLMVHKKASDLFITAGVAPSMKVQGRIVPITQSPLSVQQARDMVLNVMTPGQREEFEKTHECQFAISAQG
VGRFRVSCFYQRNCVGMVLRRIESKIPSIEELTLPPVLKQLAMTKRGIIVFVGATGSGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEYVHKHEGCIITQREVGIDTDSWDNALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLCTLHANNANQAM
DRILHFFPEDRRQQLLMDLSLNLKGIVAQMLIPTPDGKARRVAVEVLLGTPLVQDYIRQGEIHKLKEVMKESTLLGMKTF
DQALVELYHAGEISYEDALRYADSSNEVRLRIKLAQGGDAHTLSQGLDGVELEETRDGNNLGGANFLNR

Nucleotide

• Length: 1170 bp

>NTDB_id=535387 I6J77_RS04230 WP_204110692.1 977584..978753(+) (pilU) [Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247]
ATGAGCGATTTTGATTTCACCTCCTTCCTGAAGCTGATGGTGCACAAGAAGGCGTCCGACCTGTTCATCACCGCGGGCGT
GGCGCCGTCGATGAAGGTGCAGGGCCGCATCGTGCCGATCACGCAGAGCCCGCTCAGCGTGCAGCAGGCGCGCGACATGG
TGCTCAACGTGATGACGCCGGGCCAGCGCGAGGAGTTCGAGAAGACCCACGAGTGCCAGTTCGCGATCTCCGCCCAAGGC
GTGGGCCGCTTCCGCGTCTCGTGCTTCTACCAGCGCAACTGCGTCGGCATGGTGCTGCGCCGGATCGAGTCGAAGATTCC
GTCGATCGAGGAGCTGACCCTGCCGCCGGTGCTCAAGCAGCTGGCGATGACCAAGCGCGGCATCATCGTCTTCGTGGGTG
CCACCGGCTCGGGCAAATCGACCTCGCTGGCGGCGATGATCGGCTACCGCAACCAGAATTCGACCGGCCACATCATCACC
ATCGAGGACCCGATCGAATACGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGACACCGATAG
CTGGGACAACGCCCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGTACCCGCGAGGGCA
TGGACCACGCGATTGCCTTTGCCGAAACGGGCCACCTGGTGCTGTGCACGCTGCACGCGAACAACGCGAACCAGGCCATG
GATCGCATCCTGCACTTCTTCCCGGAAGACCGTCGCCAGCAGTTGTTGATGGACCTTTCGCTGAACCTGAAGGGCATCGT
GGCGCAGATGCTGATCCCCACCCCGGACGGCAAGGCGCGCCGCGTGGCGGTGGAAGTGCTGCTGGGCACGCCGCTGGTGC
AGGACTACATCCGCCAGGGCGAGATCCACAAGCTGAAGGAAGTGATGAAGGAGTCCACCCTGTTGGGCATGAAGACGTTC
GACCAGGCCCTGGTCGAGCTCTATCACGCTGGCGAGATCAGCTACGAGGACGCGTTGCGTTACGCCGACAGTTCCAACGA
GGTGCGCCTGCGCATCAAGCTGGCGCAGGGCGGCGATGCGCATACCCTGTCGCAGGGCCTGGACGGCGTGGAACTGGAGG
AGACGCGCGACGGGAACAACCTTGGCGGTGCGAATTTCCTCAATCGCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (117-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	67.112	96.144	0.645
pilU	Acinetobacter baylyi ADP1	63.764	91.517	0.584
pilU	Vibrio cholerae strain A1552	53.09	91.517	0.486
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	40.054	95.63	0.383