Detailed information NTG0535085

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6J47_RS11765
• Genome accession: NZ_CP069496
• Coordinates: 2437303..2438163 (+)
• Length: 286 a.a.
• NCBI ID: WP_032038058.1
• Uniprot ID: A0A013SYM6
• Organism: Acinetobacter pittii strain FDAARGOS_1217
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2432303..2443163

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J47_RS11745 (I6J47_11745)	secG	2432910..2433239 (-)	330	WP_032005670.1	preprotein translocase subunit SecG	-
I6J47_RS11750 (I6J47_11750)	tpiA	2433252..2434046 (-)	795	WP_017481951.1	triose-phosphate isomerase	-
I6J47_RS11755 (I6J47_11755)	pilB	2434338..2436050 (+)	1713	WP_032052992.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6J47_RS11760 (I6J47_11760)	pilC	2436077..2437303 (+)	1227	WP_005079343.1	type II secretion system F family protein	Machinery gene
I6J47_RS11765 (I6J47_11765)	pilD	2437303..2438163 (+)	861	WP_032038058.1	prepilin peptidase	Machinery gene
I6J47_RS11770 (I6J47_11770)	coaE	2438165..2438761 (+)	597	WP_032012473.1	dephospho-CoA kinase	-
I6J47_RS11775 (I6J47_11775)	-	2438758..2439672 (-)	915	WP_032038060.1	DMT family transporter	-
I6J47_RS11780 (I6J47_11780)	rlmB	2439708..2440457 (-)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
I6J47_RS11785 (I6J47_11785)	-	2440560..2440886 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
I6J47_RS11790 (I6J47_11790)	-	2440963..2442273 (-)	1311	WP_087400409.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32141.67 Da
• Isoelectric Point: 7.1044

>NTDB_id=535085 I6J47_RS11765 WP_032038058.1 2437303..2438163(+) (pilD) [Acinetobacter pittii strain FDAARGOS_1217]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFSIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=535085 I6J47_RS11765 WP_032038058.1 2437303..2438163(+) (pilD) [Acinetobacter pittii strain FDAARGOS_1217]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGATCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAGTATTTACACCTCGCCGAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGTTATG
GCGACTTTAAACTGCTTGCTGCCTTAGGTGCATGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTAGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCCTATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A013SYM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	96.154	100	0.962
pilD	Acinetobacter nosocomialis M2	95.804	100	0.958
pilD	Vibrio cholerae strain A1552	54.212	95.455	0.517
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437