Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   I6J47_RS05250 Genome accession   NZ_CP069496
Coordinates   1093318..1093698 (-) Length   126 a.a.
NCBI ID   WP_002121425.1    Uniprot ID   A0A009HD22
Organism   Acinetobacter pittii strain FDAARGOS_1217     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1088318..1098698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J47_RS05220 (I6J47_05220) tadA 1088322..1088825 (-) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -
  I6J47_RS05225 (I6J47_05225) hibch 1088831..1089955 (-) 1125 WP_016803061.1 enoyl-CoA hydratase/isomerase family protein -
  I6J47_RS05230 (I6J47_05230) ung 1089952..1090665 (-) 714 WP_002121342.1 uracil-DNA glycosylase -
  I6J47_RS05235 (I6J47_05235) - 1090719..1091315 (-) 597 WP_002121363.1 6-pyruvoyl trahydropterin synthase family protein -
  I6J47_RS05240 (I6J47_05240) gspK 1091543..1092502 (-) 960 WP_002121457.1 type II secretion system minor pseudopilin GspK -
  I6J47_RS05245 (I6J47_05245) xcpW 1092503..1093318 (-) 816 WP_002121460.1 type II secretion system minor pseudopilin GspJ Machinery gene
  I6J47_RS05250 (I6J47_05250) xcpV 1093318..1093698 (-) 381 WP_002121425.1 type II secretion system minor pseudopilin GspI Machinery gene
  I6J47_RS05255 (I6J47_05255) - 1093688..1094242 (-) 555 WP_002121405.1 type II secretion system protein -
  I6J47_RS05260 (I6J47_05260) - 1094249..1094857 (-) 609 WP_002121414.1 TetR/AcrR family transcriptional regulator -
  I6J47_RS05265 (I6J47_05265) ycfH 1094894..1095667 (-) 774 WP_002121462.1 TatD family hydrolase -
  I6J47_RS05270 (I6J47_05270) pilZ 1095685..1096026 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  I6J47_RS05275 (I6J47_05275) holB 1096037..1097017 (-) 981 WP_002121362.1 DNA polymerase III subunit delta' -
  I6J47_RS05280 (I6J47_05280) kdsB 1097031..1097792 (-) 762 WP_002121419.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.17 Da        Isoelectric Point: 9.4463

>NTDB_id=535070 I6J47_RS05250 WP_002121425.1 1093318..1093698(-) (xcpV) [Acinetobacter pittii strain FDAARGOS_1217]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=535070 I6J47_RS05250 WP_002121425.1 1093318..1093698(-) (xcpV) [Acinetobacter pittii strain FDAARGOS_1217]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTGGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAGTTTGTAGCAATGAATGAAATTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAGCAAGTTACTTCTCAAGGCGAAACATGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAGTAGATTTACAAATTAGCTTATATGATTCAGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937