Detailed information NTG0535069

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: I6J47_RS05245
• Genome accession: NZ_CP069496
• Coordinates: 1092503..1093318 (-)
• Length: 271 a.a.
• NCBI ID: WP_002121460.1
• Uniprot ID: A0A009NS11
• Organism: Acinetobacter pittii strain FDAARGOS_1217
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1087503..1098318

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J47_RS05215 (I6J47_05215)	-	1087811..1088251 (-)	441	WP_002121449.1	SRPBCC family protein	-
I6J47_RS05220 (I6J47_05220)	tadA	1088322..1088825 (-)	504	WP_002121378.1	tRNA adenosine(34) deaminase TadA	-
I6J47_RS05225 (I6J47_05225)	hibch	1088831..1089955 (-)	1125	WP_016803061.1	enoyl-CoA hydratase/isomerase family protein	-
I6J47_RS05230 (I6J47_05230)	ung	1089952..1090665 (-)	714	WP_002121342.1	uracil-DNA glycosylase	-
I6J47_RS05235 (I6J47_05235)	-	1090719..1091315 (-)	597	WP_002121363.1	6-pyruvoyl trahydropterin synthase family protein	-
I6J47_RS05240 (I6J47_05240)	gspK	1091543..1092502 (-)	960	WP_002121457.1	type II secretion system minor pseudopilin GspK	-
I6J47_RS05245 (I6J47_05245)	xcpW	1092503..1093318 (-)	816	WP_002121460.1	type II secretion system minor pseudopilin GspJ	Machinery gene
I6J47_RS05250 (I6J47_05250)	xcpV	1093318..1093698 (-)	381	WP_002121425.1	type II secretion system minor pseudopilin GspI	Machinery gene
I6J47_RS05255 (I6J47_05255)	-	1093688..1094242 (-)	555	WP_002121405.1	type II secretion system protein	-
I6J47_RS05260 (I6J47_05260)	-	1094249..1094857 (-)	609	WP_002121414.1	TetR/AcrR family transcriptional regulator	-
I6J47_RS05265 (I6J47_05265)	ycfH	1094894..1095667 (-)	774	WP_002121462.1	TatD family hydrolase	-
I6J47_RS05270 (I6J47_05270)	pilZ	1095685..1096026 (-)	342	WP_002121335.1	PilZ domain-containing protein	-
I6J47_RS05275 (I6J47_05275)	holB	1096037..1097017 (-)	981	WP_002121362.1	DNA polymerase III subunit delta'	-
I6J47_RS05280 (I6J47_05280)	kdsB	1097031..1097792 (-)	762	WP_002121419.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 271 a.a.
• Molecular weight: 30932.32 Da
• Isoelectric Point: 9.9694

>NTDB_id=535069 I6J47_RS05245 WP_002121460.1 1092503..1093318(-) (xcpW) [Acinetobacter pittii strain FDAARGOS_1217]
MIKNKSFRSPSSASRLAVRSEQMMRGYSEQSSSSCTQTKHCFKDSHTRNIVSHLATRSSSARLTRASGFTLVELLVSIAI
FAILSLLGWKVFDYLLKVRDRNTQHEVQLFELQDAYQQVLRDTLQIIPLSANQGGQLRPALEIDNQVLRFSKAGVTDPLK
QGLSPFERIEYRYDPDQKKLYRLKYSNLNTSNREQPLSSTLLSQVEQFQIMVLTPQEVTKWPEVNIDPTKPDEFRKLPKG
IKMQLTVAGVNYEWIYSLNQGDLSLSKQGGQ

Nucleotide

• Length: 816 bp

>NTDB_id=535069 I6J47_RS05245 WP_002121460.1 1092503..1093318(-) (xcpW) [Acinetobacter pittii strain FDAARGOS_1217]
ATGATAAAGAATAAAAGTTTTCGCTCTCCAAGCTCAGCTTCACGTCTTGCGGTACGATCGGAGCAGATGATGAGGGGTTA
CTCCGAGCAAAGCTCTTCGTCTTGCACTCAGACAAAGCATTGCTTTAAAGACTCTCACACTCGAAACATAGTTTCTCATC
TTGCGACACGATCGAGCAGTGCTCGATTAACTCGTGCCTCAGGATTTACTTTAGTTGAGCTTTTAGTTTCAATTGCAATT
TTTGCTATTTTATCTTTGTTGGGTTGGAAGGTTTTTGACTATTTATTAAAAGTTCGCGATCGTAATACTCAACATGAAGT
GCAGCTATTTGAATTACAAGATGCTTATCAACAAGTTTTGCGTGATACATTGCAAATTATACCTTTATCAGCCAATCAAG
GCGGGCAATTACGTCCAGCTTTAGAGATTGATAATCAAGTTCTCCGCTTTAGTAAGGCGGGTGTTACTGATCCATTAAAG
CAAGGATTATCACCTTTTGAGCGTATCGAATATCGATATGATCCTGATCAAAAAAAGCTTTATCGCCTTAAATATAGTAA
CTTAAATACTTCAAATAGAGAGCAACCCTTATCAAGTACGCTGTTGAGCCAAGTTGAACAATTTCAAATTATGGTTTTGA
CACCTCAAGAAGTAACAAAGTGGCCTGAAGTTAATATTGACCCTACAAAACCTGATGAATTTAGGAAGTTGCCAAAAGGA
ATAAAAATGCAACTCACGGTTGCAGGTGTAAATTATGAGTGGATTTATAGCTTAAACCAAGGTGACTTATCGCTCTCCAA
ACAGGGAGGTCAATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (121-250)

• Prokaryotic N-terminal methylation motif (N_methyl) (65-87)

3D structure

• AlphaFold DB: A0A009NS11

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	88.889	83.026	0.738