Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   I6J37_RS04885 Genome accession   NZ_CP069486
Coordinates   969240..970868 (-) Length   542 a.a.
NCBI ID   WP_103323361.1    Uniprot ID   -
Organism   Mammaliicoccus vitulinus strain FDAARGOS_1207     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 961654..974569 969240..970868 within 0


Gene organization within MGE regions


Location: 961654..974569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J37_RS04845 (I6J37_04845) - 961663..962445 (+) 783 WP_103322423.1 MBL fold metallo-hydrolase -
  I6J37_RS04850 (I6J37_04850) rlmH 962729..963208 (+) 480 WP_103322420.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  I6J37_RS04855 (I6J37_04855) - 963296..964711 (+) 1416 WP_103322421.1 hypothetical protein -
  I6J37_RS04860 (I6J37_04860) - 964734..965456 (-) 723 WP_103322422.1 DNA-methyltransferase -
  I6J37_RS13340 - 965473..966348 (-) 876 WP_239102456.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  I6J37_RS13345 - 966365..967390 (-) 1026 WP_239102458.1 DNA adenine methylase -
  I6J37_RS04870 (I6J37_04870) - 967493..968005 (-) 513 WP_103323364.1 DUF1643 domain-containing protein -
  I6J37_RS04875 (I6J37_04875) - 968021..968332 (-) 312 WP_103323363.1 DUF960 family protein -
  I6J37_RS04880 (I6J37_04880) - 968428..968766 (-) 339 WP_103323362.1 SAUGI family uracil-DNA glycosylase inhibitor -
  I6J37_RS04885 (I6J37_04885) ccrB 969240..970868 (-) 1629 WP_103323361.1 cassette chromosome recombinase CcrB Machinery gene
  I6J37_RS04890 (I6J37_04890) ccrA 970889..972238 (-) 1350 WP_103323360.1 cassette chromosome recombinase CcrA Machinery gene
  I6J37_RS04895 (I6J37_04895) - 972430..972708 (-) 279 WP_031903869.1 hypothetical protein -
  I6J37_RS04900 (I6J37_04900) cch1 972779..974569 (-) 1791 WP_103323359.1 cassette chromosome replicative helicase -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62215.24 Da        Isoelectric Point: 9.7135

>NTDB_id=535018 I6J37_RS04885 WP_103323361.1 969240..970868(-) (ccrB) [Mammaliicoccus vitulinus strain FDAARGOS_1207]
MKEMKRKSVGCYVRVSTISQDIDKFSINGQITQIKEYCQFHGYEVFDIYADRGVSGKTMNRPELQRMLKDAKEGKLDCVM
IYKTSRLARNTSDLLTIVEGLHKQNVEFFSLSENMKFDSNSGKLLLQILASFSEFERNNIAEGAFMGQLRRSQEGYYQGN
LPLAYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAK
YKDWNDKRRKGLNDKPVIAEGKHTPIISQDLWDKVQARKKQVSKKPQVHGKGTNLLTGIIFCEKCGAAYAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQENQVDVAALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLASTLKPTIHQYETQLNDITNQMNQLKQQQNQEKPSYDTKQIAALLQQIFQNVESMDKAQLK
ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNDTPLDEVLLSTSSLFLPQTLFLQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=535018 I6J37_RS04885 WP_103323361.1 969240..970868(-) (ccrB) [Mammaliicoccus vitulinus strain FDAARGOS_1207]
ATGAAAGAAATGAAAAGAAAATCTGTAGGATGTTATGTTAGAGTTTCAACAATTTCTCAAGACATTGATAAATTTAGTAT
TAATGGTCAAATTACACAAATAAAGGAATATTGCCAATTCCACGGATATGAAGTTTTTGATATTTACGCTGACCGTGGTG
TTTCAGGAAAAACAATGAATCGCCCAGAGTTACAACGCATGTTAAAAGATGCTAAAGAAGGTAAATTGGATTGTGTTATG
ATATATAAAACAAGTCGTTTAGCGCGTAACACATCTGACCTGTTAACAATTGTTGAAGGATTACACAAGCAAAATGTTGA
ATTCTTTAGCTTGTCCGAAAACATGAAATTTGACTCAAATAGTGGAAAATTACTCTTACAAATTTTAGCTTCCTTCTCTG
AATTTGAAAGGAATAACATCGCCGAGGGAGCATTTATGGGGCAGTTGAGAAGGTCTCAAGAAGGCTATTATCAGGGCAAT
TTACCGTTAGCTTATGATAAAATACCTGACAGTAAACATGAACTCATGATTAACCAACATGAAGCCAATATTGTGAAATA
TATTTTTGAATCTTATGCCAAAGGTCATGGTTATCGTAAAATAGCCAATGCACTCAATCACAAAGGCTATGTGACTAAAA
AAGGCAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCAAATCCATTCTATATTGGTAAAATTCAATTCGCAAAA
TACAAAGATTGGAATGATAAACGACGTAAAGGATTAAACGATAAGCCAGTAATCGCTGAAGGTAAACACACGCCTATTAT
TAGTCAAGATTTATGGGATAAAGTCCAAGCACGTAAGAAGCAAGTAAGCAAAAAGCCACAGGTACATGGTAAAGGGACAA
ATCTGTTAACTGGAATAATTTTCTGCGAAAAATGTGGTGCAGCATATGCAGCTTCAAATACAACCAATACACTCAAAGAC
GGTACTAAAAAACGTATTCGTTACTATTCGTGTAGTAATTTTCGAAATAAAGGCTCAAAGGTATGTTCTGCGAATAGTGT
TAGAGCCGATGTCATTGAAAAATATGTTATGGACCAAATACTTGAAATTGTCAAAAGTGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTCAATCAAGAGAATCAAGTCGATGTAGCTGCACTTAACCATGATATTGCTTATAAACAACAACAATTTGAT
GAAATTAACACTAAACTTAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAGCATCTACGCTCAAACCAACCAT
TCATCAATATGAAACACAACTGAATGATATCACAAACCAAATGAATCAACTCAAGCAGCAACAAAACCAAGAAAAACCAT
CTTACGATACGAAGCAAATCGCTGCCCTATTACAACAAATATTTCAAAACGTAGAATCAATGGATAAAGCACAACTCAAA
GCATTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGACGGTAATCATAAAAAACAATTCTACGTTACACTCAA
ACTCAATAATGAAATTATTAAACAACTTTTCAATGATACCCCACTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACGCTCTTTCTTCAAATCTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(180-280)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(295-360)

Resolvase, N terminal domain (Resolvase)

(11-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

80.074

100

0.801