Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   I6J73_RS11760 Genome accession   NZ_CP069473
Coordinates   2454020..2454595 (-) Length   191 a.a.
NCBI ID   WP_001829272.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain FDAARGOS_1243     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2449020..2459595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J73_RS11715 (I6J73_11720) - 2449322..2449498 (-) 177 WP_002456867.1 hypothetical protein -
  I6J73_RS11720 (I6J73_11725) - 2449556..2449765 (-) 210 WP_204116029.1 hypothetical protein -
  I6J73_RS11725 (I6J73_11730) - 2449778..2450494 (-) 717 WP_002468739.1 phage repressor protein -
  I6J73_RS11730 (I6J73_11735) - 2450508..2450723 (-) 216 WP_001830251.1 transcriptional regulator -
  I6J73_RS11735 (I6J73_11740) - 2450920..2451531 (+) 612 WP_002468741.1 LexA family transcriptional regulator -
  I6J73_RS11740 (I6J73_11745) - 2451587..2452510 (+) 924 WP_002470864.1 DUF5067 domain-containing protein -
  I6J73_RS11745 (I6J73_11750) - 2452570..2453619 (+) 1050 WP_002468743.1 site-specific integrase -
  I6J73_RS11760 (I6J73_11765) comK/comK1 2454020..2454595 (-) 576 WP_001829272.1 competence protein ComK Regulator
  I6J73_RS11765 (I6J73_11770) - 2454810..2455028 (+) 219 WP_001829292.1 IDEAL domain-containing protein -
  I6J73_RS11770 (I6J73_11775) - 2455106..2456092 (-) 987 WP_001829269.1 lipoate--protein ligase -
  I6J73_RS11775 (I6J73_11780) - 2456297..2456482 (+) 186 WP_001829339.1 DUF2187 family protein -
  I6J73_RS11780 (I6J73_11785) - 2456488..2457090 (+) 603 WP_001829312.1 CPBP family glutamic-type intramembrane protease -
  I6J73_RS11785 (I6J73_11790) - 2457193..2458698 (-) 1506 WP_001829277.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22782.87 Da        Isoelectric Point: 9.2887

>NTDB_id=534960 I6J73_RS11760 WP_001829272.1 2454020..2454595(-) (comK/comK1) [Staphylococcus epidermidis strain FDAARGOS_1243]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=534960 I6J73_RS11760 WP_001829272.1 2454020..2454595(-) (comK/comK1) [Staphylococcus epidermidis strain FDAARGOS_1243]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
AACAAATGGTACTGAAATTATCAGATTTGATCAAACTCGCAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAATTTTATGGTAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATCTCTAGTAAACCACCT
ATTTTACTTACGCCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCAGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCGTTAACGCTCA
ATGTATCATTTCATAGCTTGTGGCATCAATATACGAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGACTATAATCAGTCTTCTCTAAATATTTTCGAGGCGCTCTCACGCTACTCCCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.757

96.859

0.743
  comK/comK1 Staphylococcus aureus N315

76.757

96.859

0.743