Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6J84_RS09165 Genome accession   NZ_CP069453
Coordinates   1964604..1965140 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain FDAARGOS_1254     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1959604..1970140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J84_RS09145 (I6J84_09145) aphA 1959892..1960605 (+) 714 WP_001226933.1 acid phosphatase AphA -
  I6J84_RS09150 (I6J84_09150) yjbQ 1960716..1961132 (+) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  I6J84_RS09155 (I6J84_09155) yjbR 1961136..1961492 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  I6J84_RS09160 (I6J84_09160) uvrA 1961527..1964349 (-) 2823 WP_000357763.1 excinuclease ABC subunit UvrA -
  I6J84_RS09165 (I6J84_09165) ssb 1964604..1965140 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  I6J84_RS09170 (I6J84_09170) yjcB 1965239..1965520 (-) 282 WP_001296643.1 YjcB family protein -
  I6J84_RS09175 (I6J84_09175) pdeC 1965949..1967502 (+) 1554 WP_001337743.1 c-di-GMP phosphodiesterase PdeC -
  I6J84_RS09180 (I6J84_09180) soxS 1967538..1967861 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  I6J84_RS09185 (I6J84_09185) soxR 1967947..1968411 (+) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=534855 I6J84_RS09165 WP_000168305.1 1964604..1965140(+) (ssb) [Escherichia coli strain FDAARGOS_1254]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=534855 I6J84_RS09165 WP_000168305.1 1964604..1965140(+) (ssb) [Escherichia coli strain FDAARGOS_1254]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACGGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489