Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   LDO71_RS01655 Genome accession   NZ_CP084297
Coordinates   358857..359306 (+) Length   149 a.a.
NCBI ID   WP_114155191.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LHC22-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353857..364306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO71_RS01625 (LDO71_01625) - 354320..356425 (-) 2106 WP_001117589.1 RelA/SpoT family protein -
  LDO71_RS01630 (LDO71_01630) - 356465..356595 (-) 131 Protein_312 hypothetical protein -
  LDO71_RS01635 (LDO71_01635) rpoZ 356634..356912 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LDO71_RS01640 (LDO71_01640) gmk 356985..357614 (-) 630 WP_000015937.1 guanylate kinase -
  LDO71_RS01645 (LDO71_01645) ispH 357737..358687 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LDO71_RS01650 (LDO71_01650) - 358700..358951 (-) 252 Protein_316 hypothetical protein -
  LDO71_RS01655 (LDO71_01655) fimU 358857..359306 (+) 450 WP_114155191.1 GspH/FimT family pseudopilin Machinery gene
  LDO71_RS01660 (LDO71_01660) pilV 359303..359803 (+) 501 WP_004745401.1 type IV pilus modification protein PilV Machinery gene
  LDO71_RS01665 (LDO71_01665) pilW 359805..360842 (+) 1038 WP_114159401.1 PilW family protein Machinery gene
  LDO71_RS01670 (LDO71_01670) - 360839..361621 (+) 783 WP_114159403.1 pilus assembly PilX N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16121.76 Da        Isoelectric Point: 8.5176

>NTDB_id=534751 LDO71_RS01655 WP_114155191.1 358857..359306(+) (fimU) [Acinetobacter baumannii strain LHC22-2]
MRGIIPQEGFTLVELMVTIAVMAIIAMMAAPMFGDLLINQNLNRSTEELVSSINQARMKAVVERRQVKVQLNSTYIADTD
NQINWMPSGKAQLKTGSDTSIIFLMSGLVKDATGDTTFEICNKTGGNKSKIISVSRMGAIQSTTVGTCS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=534751 LDO71_RS01655 WP_114155191.1 358857..359306(+) (fimU) [Acinetobacter baumannii strain LHC22-2]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACAATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCGCCAATGTTTGGGGATCTGTTAATTAATCAAAATTTGAATAGAAGTACAGAGGAGCTGGTTTCAAGTATAA
ATCAGGCACGTATGAAAGCTGTGGTAGAACGTAGACAAGTAAAAGTGCAATTAAATTCTACTTATATTGCAGATACTGAT
AATCAAATTAATTGGATGCCAAGCGGAAAAGCTCAATTAAAGACGGGATCTGATACCTCTATAATATTTCTGATGTCCGG
TTTAGTAAAAGACGCAACCGGAGATACTACATTCGAAATTTGTAATAAGACTGGTGGTAATAAATCAAAAATTATTAGTG
TTTCAAGAATGGGAGCAATTCAATCGACTACGGTGGGGACATGTTCATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

40.252

100

0.43