Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I6K04_RS05775 Genome accession   NZ_CP069442
Coordinates   1214337..1215131 (-) Length   264 a.a.
NCBI ID   WP_011135741.1    Uniprot ID   Q7NVZ7
Organism   Chromobacterium violaceum strain FDAARGOS_1274     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1209337..1220131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K04_RS05745 (I6K04_05745) frr 1209701..1210258 (-) 558 WP_011135747.1 ribosome recycling factor -
  I6K04_RS05750 (I6K04_05750) pyrH 1210334..1211053 (-) 720 WP_011135746.1 UMP kinase -
  I6K04_RS05755 (I6K04_05755) tsf 1211145..1212011 (-) 867 WP_048404821.1 translation elongation factor Ts -
  I6K04_RS05760 (I6K04_05760) rpsB 1212085..1212816 (-) 732 WP_011135744.1 30S ribosomal protein S2 -
  I6K04_RS05765 (I6K04_05765) - 1212966..1213157 (-) 192 WP_011135743.1 hypothetical protein -
  I6K04_RS05770 (I6K04_05770) - 1213238..1214269 (+) 1032 WP_081526591.1 NAD(P)H-dependent flavin oxidoreductase -
  I6K04_RS05775 (I6K04_05775) comL 1214337..1215131 (-) 795 WP_011135741.1 outer membrane protein assembly factor BamD Machinery gene
  I6K04_RS05780 (I6K04_05780) rluD 1215130..1216221 (+) 1092 WP_011135740.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I6K04_RS05785 (I6K04_05785) pgeF 1216211..1216948 (+) 738 WP_081526590.1 peptidoglycan editing factor PgeF -
  I6K04_RS05790 (I6K04_05790) - 1217054..1217665 (+) 612 WP_076226894.1 AraC family transcriptional regulator -
  I6K04_RS05795 (I6K04_05795) - 1217662..1218510 (+) 849 WP_081526589.1 GNAT family N-acetyltransferase -
  I6K04_RS05800 (I6K04_05800) - 1218652..1219305 (+) 654 WP_043613811.1 HD domain-containing protein -
  I6K04_RS05805 (I6K04_05805) - 1219330..1220052 (+) 723 WP_081526588.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30267.42 Da        Isoelectric Point: 7.9695

>NTDB_id=534729 I6K04_RS05775 WP_011135741.1 1214337..1215131(-) (comL) [Chromobacterium violaceum strain FDAARGOS_1274]
MKRYVVAAMLVMVGLAGCATTETYDETRGWTVEKLYSEAHDELNSGNYTRAVKLYETLEARFPYGRYAQQAQMDLAYTHY
KDGEPELAIASADRFIKLHPTHPNLDYIYYLKGLVYYNDDSGLLAKWAGQDMSERDPRAAREAFAAFRELTTRFPSSSYA
PDAKAKMIRLVDALGGNEMHVARYYMKRGAYLAAANRAQGVVKDYANTKYPEEALAIMVAAYDKLQLPQLRDDARRVLAL
NYPQSQYLGKSWTVEEMPWWKLWK

Nucleotide


Download         Length: 795 bp        

>NTDB_id=534729 I6K04_RS05775 WP_011135741.1 1214337..1215131(-) (comL) [Chromobacterium violaceum strain FDAARGOS_1274]
ATGAAAAGATACGTTGTTGCGGCTATGTTGGTGATGGTGGGTCTTGCCGGGTGTGCGACCACGGAAACCTACGACGAGAC
GCGCGGCTGGACCGTGGAGAAGCTGTATTCGGAAGCTCACGACGAGTTGAACAGCGGCAATTATACCCGCGCAGTCAAGC
TGTATGAAACGCTGGAAGCGCGTTTCCCCTACGGCCGCTACGCGCAGCAGGCGCAGATGGATCTGGCCTACACCCATTAC
AAGGATGGCGAACCCGAACTGGCCATCGCCTCCGCCGACCGTTTCATCAAGCTGCATCCCACGCATCCGAACCTCGACTA
CATCTATTATCTGAAGGGTTTGGTGTATTACAACGACGATTCTGGCTTGCTGGCCAAATGGGCCGGCCAGGACATGAGCG
AGCGCGATCCGCGTGCCGCGCGCGAGGCGTTCGCCGCCTTCCGCGAGCTGACCACCCGCTTCCCCAGCAGCAGCTACGCG
CCGGATGCCAAGGCCAAGATGATCCGCCTGGTGGACGCCCTGGGCGGCAACGAAATGCACGTGGCGCGCTACTACATGAA
GCGCGGCGCCTATCTGGCCGCCGCCAATCGCGCGCAGGGCGTGGTCAAGGATTACGCCAACACCAAGTATCCGGAAGAGG
CGCTGGCCATCATGGTGGCCGCCTACGACAAGCTGCAGCTGCCGCAGCTGCGCGACGACGCGCGCCGCGTGCTGGCGCTC
AATTACCCGCAGAGCCAGTACCTGGGCAAGTCGTGGACGGTGGAGGAGATGCCGTGGTGGAAGCTGTGGAAATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(32-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7NVZ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

58.052

100

0.587
  comL Neisseria gonorrhoeae MS11

57.303

100

0.58