Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LDB14_RS17160 Genome accession   NZ_CP084205
Coordinates   3522169..3522645 (-) Length   158 a.a.
NCBI ID   WP_000811693.1    Uniprot ID   A0AA91EE93
Organism   Escherichia coli strain EC2648-R1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3517169..3527645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDB14_RS17130 (LDB14_17145) proB 3518301..3519404 (+) 1104 WP_001285288.1 glutamate 5-kinase -
  LDB14_RS17135 (LDB14_17150) proA 3519416..3520669 (+) 1254 WP_000893278.1 glutamate-5-semialdehyde dehydrogenase -
  LDB14_RS17145 (LDB14_17160) ykfI 3521241..3521582 (-) 342 WP_000854672.1 type IV toxin-antitoxin system toxin YkfI -
  LDB14_RS17150 (LDB14_17165) yafW 3521603..3521920 (-) 318 WP_000070395.1 type IV toxin-antitoxin system antitoxin YafW -
  LDB14_RS17155 (LDB14_17170) ykfH 3521939..3522160 (-) 222 WP_000691994.1 DUF987 domain-containing protein -
  LDB14_RS17160 (LDB14_17175) radC 3522169..3522645 (-) 477 WP_000811693.1 RadC family protein Machinery gene
  LDB14_RS17165 (LDB14_17180) yafX 3522661..3523119 (-) 459 WP_000211838.1 antirestriction protein -
  LDB14_RS17170 (LDB14_17185) ykfF 3523217..3523456 (-) 240 WP_000194654.1 DUF905 family protein -
  LDB14_RS17175 (LDB14_17190) ykfB 3523533..3524000 (-) 468 WP_001547765.1 protein YkfB -
  LDB14_RS17180 (LDB14_17195) yafY 3524023..3524466 (-) 444 WP_000824223.1 YfjS/YafY family lipoprotein -
  LDB14_RS17185 (LDB14_17200) ypjK 3524466..3524693 (-) 228 WP_001548158.1 protein YpjK -
  LDB14_RS17190 (LDB14_17205) - 3524689..3524880 (-) 192 Protein_3381 DeoR family transcriptional regulator -
  LDB14_RS17195 (LDB14_17210) yafZ 3525097..3525918 (-) 822 WP_000197389.1 DUF932 domain-containing protein -
  LDB14_RS17200 (LDB14_17215) ykfA 3526010..3526873 (-) 864 WP_001065553.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18098.78 Da        Isoelectric Point: 8.7508

>NTDB_id=534557 LDB14_RS17160 WP_000811693.1 3522169..3522645(-) (radC) [Escherichia coli strain EC2648-R1]
MKQLSFLPGEMTPQDRRLIQRALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGT
INRTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=534557 LDB14_RS17160 WP_000811693.1 3522169..3522645(-) (radC) [Escherichia coli strain EC2648-R1]
ATGAAACAGCTTTCCTTTTTACCCGGCGAGATGACGCCACAGGACCGGCGTCTCATTCAGCGGGCGCTCAGGGCTCTGGA
CCGCCACCTGCATGAGCCCGGCGTAGCCTTCACCTCTACCCACGCCGTACGTGAATGGCTGCGACTGCATATGGCCGCGC
TTGAGCGGGAAGAGTTCCGGGTGTTGTATCTGGACAACCAGAATCAGTTGATTGCCCATGAAACGCTCTTCACCGGCACG
ATTAACCGCACCGAGGTGCATCCCCGGGAGGTGGTCAAACGTGCTCTGCACTTCAACGCGGCGGCGGTGATACTCGCGCA
TAACCATCCTTCCGGCGAGACGACACCTAGCCAGGCCGACAAAACCCTCACGCAGCGACTGGTTCAGGTGCTTCAGCTGG
TGGATATCCGTGTCCCTGACCATCTGATTGTCGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA91EE93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38