Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   KBP30_RS18645 Genome accession   NZ_CP084203
Coordinates   4433743..4435152 (+) Length   469 a.a.
NCBI ID   WP_189303630.1    Uniprot ID   -
Organism   Streptomyces sp. Go40/10 strain Go 40/10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4428743..4440152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBP30_RS18630 (KBP30_18625) - 4429329..4430261 (-) 933 WP_230919771.1 Ppx/GppA phosphatase family protein -
  KBP30_RS18635 (KBP30_18630) - 4430333..4431190 (+) 858 WP_230919772.1 hypothetical protein -
  KBP30_RS18640 (KBP30_18635) - 4431408..4433501 (-) 2094 WP_305809401.1 hypothetical protein -
  KBP30_RS18645 (KBP30_18640) radA/sms 4433743..4435152 (+) 1410 WP_189303630.1 DNA repair protein RadA Machinery gene
  KBP30_RS18650 (KBP30_18645) disA 4435233..4436357 (+) 1125 WP_189303628.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  KBP30_RS18655 (KBP30_18650) - 4436475..4437311 (-) 837 WP_230919774.1 hypothetical protein -
  KBP30_RS18660 (KBP30_18655) - 4437492..4438367 (+) 876 WP_230919775.1 A/G-specific adenine glycosylase -
  KBP30_RS18665 (KBP30_18660) - 4438644..4439183 (+) 540 WP_055703482.1 SigE family RNA polymerase sigma factor -
  KBP30_RS18670 (KBP30_18665) - 4439225..4439824 (+) 600 WP_230919776.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49700.92 Da        Isoelectric Point: 8.0106

>NTDB_id=534446 KBP30_RS18645 WP_189303630.1 4433743..4435152(+) (radA/sms) [Streptomyces sp. Go40/10 strain Go 40/10]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVSTSALPIGQVDGRQATARPTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASAEHRTLYVTGEESASQVRLRADRIGALDDHLYLAAETDLAAVL
GHLDEVKPSLLILDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPADPGKVPPGMKVLEVADMGDALRVLPRSRRREAPREAEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=534446 KBP30_RS18645 WP_189303630.1 4433743..4435152(+) (radA/sms) [Streptomyces sp. Go40/10 strain Go 40/10]
ATGGCTGCCCGTACCAAGACGACCAAGGACCGCCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGGACCACGGCCCCGGGCC
GCGTGAGCACCTCCGCGCTGCCCATCGGCCAGGTCGACGGCCGGCAGGCCACCGCCCGCCCGACCGGTGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGTCTCGTACCGGGCGCGGTCGTCCTGCTCGCGGGCGAGCCCGGCGTCGGAAAGTCCACCCT
GCTGCTGGACGTGGCCGCGAAGTCGGCGAGCGCCGAGCACCGCACCCTCTATGTGACCGGCGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGCGCCGACCGCATCGGCGCCCTCGACGACCACCTGTACCTGGCGGCCGAGACGGACCTGGCCGCCGTCCTG
GGCCACCTGGACGAGGTCAAGCCGTCCCTGCTGATCCTCGACTCGGTGCAGACGGTGGCCTCCCCGGAGATCGAGGGCGC
GCCCGGGGGCATGGCGCAGGTGCGGGAGGTCGCGGGTGCTCTGATCCGCGCCTCCAAGGAGCGGGGCATGTCCACGCTGC
TCGTGGGCCATGTCACGAAGGACGGCGCCATCGCCGGGCCCCGCCTGCTGGAGCACCTGGTGGACGTCGTGCTGCACTTC
GAGGGCGACCGGCACGCCCGCCTGCGCCTGGTCCGCGGCGTGAAGAACCGCTACGGGGCGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTCGCCGACCCCAGCGGCCTGTTCCTGACCCGCCGCGCCGAGCCCGTCCCGG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTCGCCGAGGTGCAGGCACTGACCGTCGACTCCCAGATC
CCCTCCCCGCGTCGTACGACATCCGGTCTGGAGACCTCCCGGGTGTCGATGATGCTGGCCGTCCTGGAACAGCGCGGCCG
GATCAGCGCGCTCGGCAAGCGGGACATCTACTCGGCGACGGTCGGCGGCGTGAAGCTGTCGGAGCCGGCCGCCGACCTCG
CCATCGCGCTCGCCCTGGCCTCCGCCGCCAGCGACACCCCGCTGCCGAAGAACCTGGTGGCGATCGGCGAGGTGGGGCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTGCAGCGCAGACTCTCCGAGGCACACCGGCTGGGCTTCACGCACGCGCTCGT
ACCGGCCGACCCGGGGAAGGTGCCGCCCGGCATGAAGGTCCTGGAAGTCGCCGATATGGGGGACGCGCTCCGGGTTCTGC
CGCGCTCACGTCGTCGAGAGGCCCCACGGGAGGCGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.027

96.375

0.424
  radA Streptococcus mitis SK321

43.459

96.162

0.418
  radA Streptococcus mitis NCTC 12261

43.459

96.162

0.418
  radA Streptococcus pneumoniae Rx1

43.016

96.162

0.414
  radA Streptococcus pneumoniae D39

43.016

96.162

0.414
  radA Streptococcus pneumoniae R6

43.016

96.162

0.414
  radA Streptococcus pneumoniae TIGR4

43.016

96.162

0.414