Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JR311_RS09040 Genome accession   NZ_CP069391
Coordinates   1795387..1796286 (+) Length   299 a.a.
NCBI ID   WP_173612748.1    Uniprot ID   -
Organism   Bacillus velezensis strain Sam8H1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1790387..1801286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR311_RS09020 (JR311_09020) - 1791078..1792781 (+) 1704 WP_204530559.1 glycosyl transferase -
  JR311_RS09025 (JR311_09025) - 1792778..1793059 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  JR311_RS09030 (JR311_09030) sucC 1793234..1794391 (+) 1158 WP_204530560.1 ADP-forming succinate--CoA ligase subunit beta -
  JR311_RS09035 (JR311_09035) sucD 1794420..1795322 (+) 903 WP_204530561.1 succinate--CoA ligase subunit alpha -
  JR311_RS09040 (JR311_09040) dprA 1795387..1796286 (+) 900 WP_173612748.1 DNA-processing protein DprA Machinery gene
  JR311_RS09045 (JR311_09045) topA 1796468..1798543 (+) 2076 WP_025649465.1 type I DNA topoisomerase -
  JR311_RS09050 (JR311_09050) trmFO 1798608..1799915 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JR311_RS09055 (JR311_09055) xerC 1799985..1800902 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32834.94 Da        Isoelectric Point: 7.8285

>NTDB_id=534370 JR311_RS09040 WP_173612748.1 1795387..1796286(+) (dprA) [Bacillus velezensis strain Sam8H1]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTALSEGKTVPEAIFREIERKDPELDEVLSDYRREGITVI
PISSTRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKLGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=534370 JR311_RS09040 WP_173612748.1 1795387..1796286(+) (dprA) [Bacillus velezensis strain Sam8H1]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATTATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGCTTTATCAGAAGGGAAAACAGTGCCCGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAACCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCCGCTTCTTGAAAAAGGCAGAAAACTCGGGATTGTAGGAACGCGGAAACCGACAGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCATTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.234

100

0.702
  dprA Legionella pneumophila strain ERS1305867

42.322

89.298

0.378
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368