Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   I6G24_RS07980 Genome accession   NZ_CP084189
Coordinates   1536924..1537736 (+) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis strain FDAARGOS_867     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1531924..1542736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G24_RS07955 (I6G24_07960) yaaT 1531977..1532759 (-) 783 WP_010905316.1 stage 0 sporulation family protein Regulator
  I6G24_RS07960 (I6G24_07965) - 1532811..1533671 (-) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  I6G24_RS07965 (I6G24_07970) tmk 1533804..1534439 (-) 636 WP_012897230.1 dTMP kinase -
  I6G24_RS07970 (I6G24_07975) yycF 1534617..1535318 (+) 702 WP_003131580.1 response regulator YycF -
  I6G24_RS07975 (I6G24_07980) vicK 1535311..1536753 (+) 1443 WP_010905315.1 cell wall metabolism sensor histidine kinase WalK Regulator
  I6G24_RS07980 (I6G24_07985) vicX 1536924..1537736 (+) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  I6G24_RS07985 (I6G24_07990) groL 1537782..1539410 (-) 1629 WP_003131585.1 chaperonin GroEL -
  I6G24_RS07990 (I6G24_07995) groES 1539498..1539782 (-) 285 WP_143459892.1 co-chaperone GroES -
  I6G24_RS07995 (I6G24_08000) - 1539902..1540291 (-) 390 WP_023163755.1 single-stranded DNA-binding protein -
  I6G24_RS08000 (I6G24_08005) nox 1540381..1541721 (-) 1341 WP_023163754.1 H2O-forming NADH oxidase -
  I6G24_RS08005 (I6G24_08010) ytpR 1541884..1542510 (-) 627 WP_023163753.1 YtpR family tRNA-binding protein -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=534369 I6G24_RS07980 WP_003131583.1 1536924..1537736(+) (vicX) [Lactococcus lactis strain FDAARGOS_867]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=534369 I6G24_RS07980 WP_003131583.1 1536924..1537736(+) (vicX) [Lactococcus lactis strain FDAARGOS_867]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCTTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685