Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JR311_RS08190 Genome accession   NZ_CP069391
Coordinates   1581529..1581813 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain Sam8H1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1576529..1586813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR311_RS08170 (JR311_08170) - 1577777..1578697 (+) 921 WP_204530523.1 ketopantoate reductase family protein -
  JR311_RS08175 (JR311_08175) - 1578714..1579946 (-) 1233 WP_070081754.1 aminopeptidase -
  JR311_RS08180 (JR311_08180) - 1580047..1580181 (-) 135 WP_003154559.1 protein YkpC -
  JR311_RS08185 (JR311_08185) mreBH 1580253..1581260 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  JR311_RS08190 (JR311_08190) abrB 1581529..1581813 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JR311_RS08195 (JR311_08195) - 1581986..1583290 (+) 1305 WP_014304932.1 ATP-binding protein -
  JR311_RS08200 (JR311_08200) - 1583292..1584119 (+) 828 WP_165408998.1 gamma-glutamylcyclotransferase -
  JR311_RS08205 (JR311_08205) ktrC 1584160..1584825 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  JR311_RS08210 (JR311_08210) ade 1584974..1586707 (+) 1734 WP_204530524.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=534369 JR311_RS08190 WP_024085249.1 1581529..1581813(+) (abrB) [Bacillus velezensis strain Sam8H1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=534369 JR311_RS08190 WP_024085249.1 1581529..1581813(+) (abrB) [Bacillus velezensis strain Sam8H1]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543