Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   JR311_RS02915 Genome accession   NZ_CP069391
Coordinates   555435..555833 (-) Length   132 a.a.
NCBI ID   WP_204530263.1    Uniprot ID   -
Organism   Bacillus velezensis strain Sam8H1     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 550435..560833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR311_RS20640 - 551454..551582 (-) 129 Protein_533 hypothetical protein -
  JR311_RS02885 (JR311_02885) - 551727..552929 (+) 1203 WP_204530260.1 GTP-binding protein -
  JR311_RS02890 (JR311_02890) - 552994..554130 (+) 1137 WP_204530261.1 zinc-dependent alcohol dehydrogenase -
  JR311_RS02895 (JR311_02895) - 554145..554579 (+) 435 WP_003156592.1 RDD family protein -
  JR311_RS02900 (JR311_02900) - 554696..554971 (+) 276 WP_369719109.1 YckD family protein -
  JR311_RS20910 - 555110..555180 (+) 71 Protein_538 family 1 glycosylhydrolase -
  JR311_RS02910 (JR311_02910) - 555187..555416 (+) 230 Protein_539 family 1 glycosylhydrolase -
  JR311_RS02915 (JR311_02915) nin/comJ 555435..555833 (-) 399 WP_204530263.1 competence protein ComJ Regulator
  JR311_RS02920 (JR311_02920) nucA/comI 555857..556294 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JR311_RS02925 (JR311_02925) hxlB 556653..557210 (-) 558 WP_077721772.1 6-phospho-3-hexuloisomerase -
  JR311_RS02930 (JR311_02930) hxlA 557207..557842 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  JR311_RS02935 (JR311_02935) - 558074..558436 (+) 363 WP_016936795.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15014.05 Da        Isoelectric Point: 4.9685

>NTDB_id=534345 JR311_RS02915 WP_204530263.1 555435..555833(-) (nin/comJ) [Bacillus velezensis strain Sam8H1]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVLSYEKKATVPF
KAVKDGIEIESVMSKRLFFNIPKGRYSLTCYSVPAEISDLHADTYIIDADAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=534345 JR311_RS02915 WP_204530263.1 555435..555833(-) (nin/comJ) [Bacillus velezensis strain Sam8H1]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACTATCCTATGAGAAAAAAGCGACTGTTCCCTTT
AAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTAATATTCCGAAAGGCCGGTACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGACCTTCATGCGGATACGTATATTATTGATGCAGACGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.744

97.727

0.75