Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   LB316_RS08345 Genome accession   NZ_CP084107
Coordinates   1721874..1723136 (-) Length   420 a.a.
NCBI ID   WP_000472293.1    Uniprot ID   Q6GG31
Organism   Staphylococcus aureus strain CC49/ST49-MSSA     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1716874..1728136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB316_RS08320 (LB316_08315) - 1717072..1717740 (-) 669 WP_000805955.1 uroporphyrinogen-III synthase -
  LB316_RS08325 (LB316_08320) hemC 1717762..1718688 (-) 927 WP_001230225.1 hydroxymethylbilane synthase -
  LB316_RS08330 (LB316_08325) - 1718730..1719545 (-) 816 WP_001157329.1 cytochrome c biogenesis protein -
  LB316_RS08335 (LB316_08330) hemA 1719567..1720913 (-) 1347 WP_000545461.1 glutamyl-tRNA reductase -
  LB316_RS08340 (LB316_08335) yihA 1721130..1721720 (-) 591 WP_000867693.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  LB316_RS08345 (LB316_08340) clpX 1721874..1723136 (-) 1263 WP_000472293.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  LB316_RS08350 (LB316_08345) tig 1723287..1724588 (-) 1302 WP_000127572.1 trigger factor -
  LB316_RS08355 (LB316_08350) - 1724636..1724746 (-) 111 WP_031927333.1 hypothetical protein -
  LB316_RS08360 (LB316_08355) - 1724751..1725680 (-) 930 WP_001280028.1 hypothetical protein -
  LB316_RS08365 (LB316_08360) - 1725699..1726307 (-) 609 WP_000032666.1 NUDIX domain-containing protein -
  LB316_RS08370 (LB316_08365) rplT 1726449..1726805 (-) 357 WP_001138360.1 50S ribosomal protein L20 -
  LB316_RS08375 (LB316_08370) rpmI 1726852..1727052 (-) 201 WP_001125540.1 50S ribosomal protein L35 -
  LB316_RS08380 (LB316_08375) infC 1727081..1727608 (-) 528 WP_001791162.1 translation initiation factor IF-3 -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46279.44 Da        Isoelectric Point: 4.2645

>NTDB_id=534301 LB316_RS08345 WP_000472293.1 1721874..1723136(-) (clpX) [Staphylococcus aureus strain CC49/ST49-MSSA]
MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAITELPTPKEIMDHLNEYVIGQEK
AKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENIL
LRLIQAADFDIDKAEKGIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN
ILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNIL
TQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIERKTGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEE
TEPELYDAEGNLINNSKTSA

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=534301 LB316_RS08345 WP_000472293.1 1721874..1723136(-) (clpX) [Staphylococcus aureus strain CC49/ST49-MSSA]
ATGTTTAAATTCAATGAAGATGAAGAAAATTTGAAATGCTCTTTCTGCGGAAAAGACCAAGATCAAGTAAAAAAACTTGT
AGCAGGAAGTGGTGTATATATTTGTAATGAGTGTATTGAATTATGCTCAGAAATCGTCGAAGAAGAATTAGCTCAAAACA
CTTCTGAAGCGATTACAGAATTACCTACTCCTAAAGAAATTATGGATCATTTAAACGAATATGTTATTGGTCAAGAAAAA
GCTAAAAAATCTTTAGCTGTGGCTGTTTATAACCACTATAAGCGTATTCAACAATTAGGACCAAAAGAAGATGATGTTGA
ATTACAAAAAAGTAACATTGCCTTAATTGGGCCAACAGGTAGTGGTAAAACATTATTAGCTCAAACATTAGCCAAGACGT
TGAATGTACCATTTGCAATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTAGGCGATGATGTTGAAAATATCTTG
TTGAGATTAATTCAAGCAGCTGACTTTGACATTGATAAAGCCGAAAAAGGTATTATTTATGTAGATGAAATTGATAAAAT
TGCACGTAAATCTGAAAACACATCTATAACACGTGACGTTTCAGGTGAAGGTGTTCAACAAGCATTGCTTAAAATCTTAG
AAGGTACGACTGCAAGTGTTCCGCCACAAGGTGGACGCAAACATCCAAACCAAGAAATGATTCAAATTGATACGACAAAT
ATCTTATTTATTCTTGGTGGTGCCTTTGATGGTATTGAAGAAGTGATTAAGCGCCGTCTTGGTGAAAAAGTTATTGGTTT
CTCAAGCAATGAAGCTGATAAATATGACGAACAAGCATTATTAGCACAAATTCGCCCAGAAGATTTGCAAGCCTATGGTT
TGATTCCTGAATTTATCGGACGTGTGCCAATTGTAGCTAATTTAGAAACATTAGATGTAACTGCGTTGAAAAACATCTTA
ACGCAACCTAAAAATGCACTTGTGAAACAATATACTAAAATGCTGGAATTAGATGATGTGGATTTAGAGTTCACTGAAGA
AGCTTTATCAGCCATTAGTGAAAAAGCAATTGAAAGAAAAACAGGTGCGCGTGGTTTGCGTTCAATCATAGAAGAATCGT
TAATCGATATTATGTTTGATGTGCCTTCTAACGAAAATGTAACGAAGGTAGTTATTACAGCACAAACAATTAATGAAGAA
ACTGAACCAGAACTATACGACGCAGAAGGTAATTTAATTAATAATAGTAAAACATCAGCTTAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-305)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6GG31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

66.917

95

0.636
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.456

94.048

0.531