Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LCF29_RS20230 Genome accession   NZ_CP084096
Coordinates   4232584..4233321 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O78 strain 3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4227584..4238321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCF29_RS20215 (LCF29_20215) clpC 4228038..4230611 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  LCF29_RS20220 (LCF29_20220) yfiH 4230741..4231472 (-) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  LCF29_RS20225 (LCF29_20225) rluD 4231469..4232449 (-) 981 WP_000079110.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LCF29_RS20230 (LCF29_20230) comL 4232584..4233321 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  LCF29_RS20235 (LCF29_20235) raiA 4233592..4233933 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  LCF29_RS20240 (LCF29_20240) pheL 4234037..4234084 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  LCF29_RS20245 (LCF29_20245) pheA 4234183..4235343 (+) 1161 WP_000200127.1 bifunctional chorismate mutase/prephenate dehydratase -
  LCF29_RS20250 (LCF29_20250) tyrA 4235386..4236507 (-) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  LCF29_RS20255 (LCF29_20255) aroF 4236518..4237588 (-) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  LCF29_RS20260 (LCF29_20260) yfiL 4237798..4238163 (+) 366 WP_001301878.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=534207 LCF29_RS20230 WP_000197686.1 4232584..4233321(+) (comL) [Escherichia coli O78 strain 3]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=534207 LCF29_RS20230 WP_000197686.1 4232584..4233321(+) (comL) [Escherichia coli O78 strain 3]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTAAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376