Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H8R35_RS07480 Genome accession   NZ_CP084085
Coordinates   1445654..1446202 (-) Length   182 a.a.
NCBI ID   WP_002869474.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2167     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1440654..1451202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R35_RS07450 (H8R35_001256) ctsT 1440704..1441006 (-) 303 WP_002875928.1 hypothetical protein Machinery gene
  H8R35_RS07455 (H8R35_001257) proC 1441003..1441734 (-) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  H8R35_RS07460 (H8R35_001258) fliW 1441734..1442123 (-) 390 WP_002852982.1 flagellar assembly protein FliW -
  H8R35_RS07465 (H8R35_001259) - 1442284..1442931 (+) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  H8R35_RS07470 (H8R35_001260) lon 1442948..1445323 (+) 2376 WP_002852988.1 endopeptidase La -
  H8R35_RS07475 (H8R35_001261) rpsR 1445383..1445643 (-) 261 WP_002853032.1 30S ribosomal protein S18 -
  H8R35_RS07480 (H8R35_001262) ssb 1445654..1446202 (-) 549 WP_002869474.1 single-stranded DNA-binding protein Machinery gene
  H8R35_RS07485 (H8R35_001263) rpsF 1446211..1446588 (-) 378 WP_002853062.1 30S ribosomal protein S6 -
  H8R35_RS07490 - 1446675..1447541 (-) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  H8R35_RS07495 (H8R35_001264) rseP 1447534..1448640 (-) 1107 WP_002869473.1 RIP metalloprotease RseP -
  H8R35_RS07500 (H8R35_001265) pgsA 1448637..1449173 (-) 537 WP_002869472.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  H8R35_RS07505 (H8R35_001266) rdxA 1449298..1449903 (-) 606 WP_002869471.1 NAD(P)H-dependent oxidoreductase -
  H8R35_RS07510 - 1449903..1450522 (-) 620 Protein_1457 NAD(P)H-dependent oxidoreductase -
  H8R35_RS07515 (H8R35_001267) - 1450586..1451011 (-) 426 WP_254990823.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20569.47 Da        Isoelectric Point: 5.0431

>NTDB_id=534150 H8R35_RS07480 WP_002869474.1 1445654..1446202(-) (ssb) [Campylobacter jejuni strain MS2167]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQSPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=534150 H8R35_RS07480 WP_002869474.1 1445654..1446202(-) (ssb) [Campylobacter jejuni strain MS2167]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAGAGAAACCAAAGCCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.068

96.703

0.368
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363