Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JN757_RS20645 Genome accession   NZ_CP069352
Coordinates   4738965..4739600 (-) Length   211 a.a.
NCBI ID   WP_203419025.1    Uniprot ID   -
Organism   Pseudomonas granadensis isolate CT364     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4733965..4744600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN757_RS20610 (JN757_20600) - 4734295..4734765 (-) 471 WP_203419016.1 (2Fe-2S)-binding protein -
  JN757_RS20615 (JN757_20605) murB 4735079..4736098 (-) 1020 WP_203419018.1 UDP-N-acetylmuramate dehydrogenase -
  JN757_RS20620 (JN757_20610) - 4736095..4736559 (-) 465 WP_203419019.1 low molecular weight protein-tyrosine-phosphatase -
  JN757_RS20625 (JN757_20615) kdsB 4736559..4737323 (-) 765 WP_203419021.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JN757_RS20630 (JN757_20620) - 4737320..4737505 (-) 186 WP_003179363.1 Trm112 family protein -
  JN757_RS20635 (JN757_20625) lpxK 4737530..4738540 (-) 1011 WP_203419023.1 tetraacyldisaccharide 4'-kinase -
  JN757_RS20640 (JN757_20630) - 4738540..4738968 (-) 429 WP_090285229.1 biopolymer transporter ExbD -
  JN757_RS20645 (JN757_20635) exbB 4738965..4739600 (-) 636 WP_203419025.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JN757_RS20650 (JN757_20640) comA 4739702..4741936 (-) 2235 WP_203419026.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JN757_RS20655 (JN757_20645) - 4742073..4742591 (+) 519 WP_203419028.1 DUF2062 domain-containing protein -
  JN757_RS20660 (JN757_20650) - 4743419..4744198 (-) 780 WP_039760202.1 ABC transporter permease -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22955.10 Da        Isoelectric Point: 6.8771

>NTDB_id=534136 JN757_RS20645 WP_203419025.1 4738965..4739600(-) (exbB) [Pseudomonas granadensis isolate CT364]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGTGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=534136 JN757_RS20645 WP_203419025.1 4738965..4739600(-) (exbB) [Pseudomonas granadensis isolate CT364]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCAATTGTCGC
CGAGCGGCTGTGGACCCTGCGCGCCAGCCGCGTTACCCCCGAGCATCTGCTGGGCCAGGTCTGGGTCTGGATCAAGGACA
AACAGCTCAACAAGGAAAAACTCAAGGAGTTGCGCGCCAACTCGCCGCTGGGTGAAATCCTCGCTGCCGGCCTGGCCAAT
TCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCCCGCGTCATCCATGAGTTGGAGCGCTACAT
CAATGCACTCGGCACCATCGCCGCGATGGCGCCGCTGCTCGGTCTGCTCGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCGTTCACCGGTACCGGCATGACCACCAATGCTTCGGTCCTCGCCGGCGGTATTTCCAAAGCGCTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAGCGCCGCATCGATGAGCTGGTGGTTGGCAT
GGAGCAGGAAGCAATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848