Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H8R35_RS01135 Genome accession   NZ_CP084085
Coordinates   219015..219788 (-) Length   257 a.a.
NCBI ID   WP_002874287.1    Uniprot ID   Q0PAN4
Organism   Campylobacter jejuni strain MS2167     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 214015..224788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R35_RS01105 aspS 214199..215950 (+) 1752 WP_255020521.1 aspartate--tRNA ligase -
  H8R35_RS01110 (H8R35_000171) adk 215947..216525 (+) 579 WP_002855137.1 adenylate kinase -
  H8R35_RS01115 (H8R35_000172) ppa 216535..217053 (+) 519 WP_002870091.1 inorganic diphosphatase -
  H8R35_RS01120 (H8R35_000173) msrA 217094..217591 (+) 498 WP_002874288.1 peptide-methionine (S)-S-oxide reductase MsrA -
  H8R35_RS01125 - 217767..218606 (-) 840 WP_079263668.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  H8R35_RS01130 (H8R35_000174) dprB 218635..219018 (-) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  H8R35_RS01135 (H8R35_000175) dprA 219015..219788 (-) 774 WP_002874287.1 DNA-processing protein DprA Machinery gene
  H8R35_RS01140 - 219778..220860 (-) 1083 WP_002874286.1 divergent polysaccharide deacetylase family protein -
  H8R35_RS01145 (H8R35_000176) ilvC 220864..221886 (-) 1023 WP_002874285.1 ketol-acid reductoisomerase -
  H8R35_RS01150 - 222005..223939 (+) 1935 WP_002870085.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28774.64 Da        Isoelectric Point: 7.6510

>NTDB_id=534112 H8R35_RS01135 WP_002874287.1 219015..219788(-) (dprA) [Campylobacter jejuni strain MS2167]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTATNLLLKENKAKLICDFKEFVSEFASIDMNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=534112 H8R35_RS01135 WP_002874287.1 219015..219788(-) (dprA) [Campylobacter jejuni strain MS2167]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTGCACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGCATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGCATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAGCAAATTTATGAAAATGCTTTAGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTGC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCTGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAGCCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGCAACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAATTTGCAAGTATAGATATGAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0PAN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1
  dprA Helicobacter pylori 26695

48.75

93.385

0.455