Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JRC48_RS08395 Genome accession   NZ_CP069349
Coordinates   1758124..1758690 (-) Length   188 a.a.
NCBI ID   WP_235069149.1    Uniprot ID   -
Organism   Turicibacter sp. TJ11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1753124..1763690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRC48_RS08380 - 1754108..1755022 (-) 915 WP_235069147.1 DUF2232 domain-containing protein -
  JRC48_RS08385 - 1757087..1757254 (+) 168 WP_235069148.1 hypothetical protein -
  JRC48_RS08390 rpsR 1757837..1758070 (-) 234 WP_006784586.1 30S ribosomal protein S18 -
  JRC48_RS08395 ssbA 1758124..1758690 (-) 567 WP_235069149.1 single-stranded DNA-binding protein Machinery gene
  JRC48_RS08400 rpsF 1758721..1759008 (-) 288 WP_235069150.1 30S ribosomal protein S6 -
  JRC48_RS08405 ychF 1759308..1760408 (-) 1101 WP_235069151.1 redox-regulated ATPase YchF -
  JRC48_RS08410 - 1760641..1761033 (+) 393 WP_235069152.1 NUDIX domain-containing protein -
  JRC48_RS08415 - 1761059..1763302 (-) 2244 WP_235069153.1 glycosyltransferase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20194.12 Da        Isoelectric Point: 4.5673

>NTDB_id=534092 JRC48_RS08395 WP_235069149.1 1758124..1758690(-) (ssbA) [Turicibacter sp. TJ11]
MINRVVLVGRLTRDPELKYTTNGIANLRFSIAVNRTFTSQNGERQADFINCVAWRGQAENMAKFLRKGSLIGVEGRIETG
SYQAQDGSMRYTTDVVCDSVQFLEPRSASADRGNFGAQPSQDFGGGFGGGYGGTPSFQPQAPASNPFGGNPFGGAPSPDQ
GFTNPSQSFNNEPDFSSTINISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=534092 JRC48_RS08395 WP_235069149.1 1758124..1758690(-) (ssbA) [Turicibacter sp. TJ11]
ATGATTAATCGCGTTGTTTTAGTAGGGCGATTAACTCGTGATCCAGAACTAAAGTATACAACTAACGGTATCGCTAATTT
GCGATTCAGTATTGCGGTTAATCGCACTTTCACTAGTCAAAATGGAGAACGTCAAGCAGATTTTATCAACTGTGTTGCAT
GGCGCGGTCAAGCTGAGAACATGGCTAAGTTTTTACGTAAAGGATCTCTTATCGGAGTGGAAGGACGTATTGAAACAGGT
AGCTATCAAGCTCAGGATGGCTCAATGCGCTACACAACAGATGTTGTTTGCGATAGTGTGCAGTTCTTAGAACCACGCTC
TGCATCTGCTGATCGAGGAAACTTTGGAGCACAACCATCACAAGACTTCGGTGGAGGTTTTGGAGGAGGATACGGTGGAA
CACCATCATTCCAACCTCAAGCACCTGCATCAAATCCTTTTGGTGGAAATCCATTTGGAGGAGCGCCAAGTCCAGATCAA
GGCTTCACAAATCCATCTCAATCATTTAATAATGAGCCTGATTTTAGCTCAACTATTAATATTTCTGATGATGATTTACC
ATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.947

100

0.495
  ssb Latilactobacillus sakei subsp. sakei 23K

46.875

100

0.479