Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   JRC48_RS05375 Genome accession   NZ_CP069349
Coordinates   1158935..1160692 (-) Length   585 a.a.
NCBI ID   WP_235070824.1    Uniprot ID   -
Organism   Turicibacter sp. TJ11     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1153935..1165692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRC48_RS05355 - 1154312..1155604 (-) 1293 WP_235070820.1 PTS sugar transporter subunit IIC -
  JRC48_RS05360 - 1155627..1155932 (-) 306 WP_235070821.1 PTS sugar transporter subunit IIB -
  JRC48_RS05365 - 1156810..1156980 (-) 171 WP_235070822.1 hypothetical protein -
  JRC48_RS05370 rcrQ 1157172..1158935 (-) 1764 WP_235070823.1 ABC transporter ATP-binding protein Regulator
  JRC48_RS05375 rcrP 1158935..1160692 (-) 1758 WP_235070824.1 ABC transporter ATP-binding protein Regulator
  JRC48_RS05380 - 1160861..1161901 (-) 1041 WP_235070825.1 HAMP domain-containing sensor histidine kinase -
  JRC48_RS05385 - 1161898..1162572 (-) 675 WP_235070826.1 response regulator transcription factor -
  JRC48_RS05390 - 1162888..1163646 (-) 759 WP_235070827.1 YwaF family protein -
  JRC48_RS05395 - 1163653..1164897 (-) 1245 WP_235070828.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64617.38 Da        Isoelectric Point: 6.5173

>NTDB_id=534086 JRC48_RS05375 WP_235070824.1 1158935..1160692(-) (rcrP) [Turicibacter sp. TJ11]
MIQLFKKLKAIEWGLFGVSFIFIVTQVWLDLKIPDYMSEITRLVQTPGSEMKDILVAGGWMLLCAFGSLATSMVVAAISA
KIASNLSARLRFILFDKVQSFSMEEINHFSTSSLVTRSTNDVNQVQMFIVMGLQMLIKAPILAGWALMKIMDKSWQWTLS
TGVAVIALLVIVGVCVLIALPKFKRVQKLTDNLNRIARENITGLRVVRAYNAEDYQEDKFEIANKELTSTNLFTNSVLAF
LMPSISLIMSGLSLAIYWVGAIVINEADLPSKMTLFSDMIVFSSYAMQVVMAFMMLIMIFMILPRATVSAKRINEVLNTK
VTIENGTVEESPAGISGEIEFKNVGFKYPDADDCVIKDITFKANRGETIAFIGSTGCGKSTLVNLIPRFYDVSEGEILLN
GINVKDYDQKALRNKIGYVSQKAVLFGGTVQSNVSFGDNGKASADIHQVMDAIDIAQSTDFVEKMDGSYEAHVAQGGTNL
SGGQKQRLSIARAIARRPEILIFDDSFSALDYKTDRRLRSALKKETLGTTLLIVAQRIGTIKDADKIIVLDEGKIVGVGS
HEDLMKTCDVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=534086 JRC48_RS05375 WP_235070824.1 1158935..1160692(-) (rcrP) [Turicibacter sp. TJ11]
ATGATTCAATTATTTAAAAAATTAAAAGCAATTGAATGGGGTTTATTTGGTGTTAGCTTCATTTTTATTGTGACTCAAGT
TTGGTTAGATTTAAAAATACCAGATTATATGAGTGAAATTACTCGACTGGTTCAAACGCCAGGAAGTGAAATGAAGGATA
TTTTAGTAGCGGGAGGCTGGATGTTACTTTGTGCATTTGGAAGTTTGGCAACTTCAATGGTTGTAGCAGCGATCTCTGCT
AAAATTGCGTCAAACCTTTCAGCTCGTTTACGCTTCATTTTATTTGATAAAGTTCAGTCATTTTCGATGGAAGAGATTAA
TCATTTTTCAACGTCAAGTTTAGTCACTCGTTCAACAAACGACGTCAATCAAGTTCAAATGTTCATTGTCATGGGGTTAC
AAATGTTAATTAAGGCTCCTATTTTAGCTGGATGGGCATTAATGAAAATCATGGATAAAAGTTGGCAATGGACACTATCA
ACGGGAGTGGCTGTCATCGCCTTATTAGTCATCGTTGGAGTTTGTGTGTTAATTGCTCTTCCAAAGTTTAAACGTGTTCA
AAAGTTAACAGATAATTTAAATCGAATTGCTCGCGAAAACATCACAGGATTACGTGTGGTTCGTGCTTATAATGCGGAGG
ACTATCAAGAAGACAAGTTTGAAATAGCGAATAAAGAATTAACGAGCACTAACTTATTTACGAACTCTGTATTAGCCTTT
TTAATGCCAAGTATTAGTTTAATTATGAGTGGATTAAGTTTAGCGATTTATTGGGTAGGGGCTATTGTGATTAATGAAGC
TGATCTGCCATCTAAAATGACGCTATTTTCAGATATGATAGTTTTTTCATCTTATGCGATGCAAGTCGTGATGGCGTTTA
TGATGTTAATTATGATTTTTATGATTTTACCGCGTGCCACTGTTTCAGCGAAACGTATTAACGAAGTTTTAAATACAAAA
GTAACGATTGAAAACGGAACAGTCGAAGAATCACCAGCCGGTATATCAGGTGAAATTGAATTTAAAAATGTTGGCTTTAA
GTATCCAGATGCGGACGATTGTGTGATTAAAGATATTACCTTTAAAGCAAATCGTGGAGAAACGATTGCGTTCATTGGTT
CAACAGGGTGTGGAAAAAGTACACTGGTTAACTTAATTCCACGTTTTTATGATGTTAGTGAAGGTGAGATTTTACTCAAT
GGTATTAACGTTAAAGATTATGATCAAAAGGCGTTACGTAACAAAATCGGTTATGTTTCACAAAAAGCGGTCTTATTTGG
TGGAACGGTTCAATCAAATGTTTCTTTTGGTGATAATGGAAAGGCATCAGCAGATATTCATCAAGTGATGGATGCGATTG
ACATTGCACAGTCAACGGATTTTGTTGAAAAGATGGATGGAAGTTATGAGGCACATGTTGCTCAAGGTGGAACGAATCTT
TCAGGTGGACAAAAGCAACGTTTATCGATTGCTCGTGCGATTGCTCGTCGCCCAGAAATTTTAATTTTTGATGATTCTTT
CTCAGCACTTGATTATAAAACGGATCGTCGATTAAGAAGTGCGCTAAAAAAAGAAACGTTAGGAACAACATTACTTATTG
TCGCTCAGCGAATTGGAACGATTAAAGATGCGGATAAAATTATTGTTTTAGATGAAGGGAAGATTGTTGGGGTAGGATCG
CATGAAGACTTAATGAAAACATGTGACGTTTATCAAGAGATTGCCTATTCTCAGCTTTCAAAGGAGGAATTAGCGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(357-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.678

100

0.526