Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   JRC48_RS05370 Genome accession   NZ_CP069349
Coordinates   1157172..1158935 (-) Length   587 a.a.
NCBI ID   WP_235070823.1    Uniprot ID   -
Organism   Turicibacter sp. TJ11     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1152172..1163935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRC48_RS05350 - 1152823..1154292 (-) 1470 WP_235070819.1 glycoside hydrolase family 1 protein -
  JRC48_RS05355 - 1154312..1155604 (-) 1293 WP_235070820.1 PTS sugar transporter subunit IIC -
  JRC48_RS05360 - 1155627..1155932 (-) 306 WP_235070821.1 PTS sugar transporter subunit IIB -
  JRC48_RS05365 - 1156810..1156980 (-) 171 WP_235070822.1 hypothetical protein -
  JRC48_RS05370 rcrQ 1157172..1158935 (-) 1764 WP_235070823.1 ABC transporter ATP-binding protein Regulator
  JRC48_RS05375 rcrP 1158935..1160692 (-) 1758 WP_235070824.1 ABC transporter ATP-binding protein Regulator
  JRC48_RS05380 - 1160861..1161901 (-) 1041 WP_235070825.1 HAMP domain-containing sensor histidine kinase -
  JRC48_RS05385 - 1161898..1162572 (-) 675 WP_235070826.1 response regulator transcription factor -
  JRC48_RS05390 - 1162888..1163646 (-) 759 WP_235070827.1 YwaF family protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 65277.61 Da        Isoelectric Point: 5.3250

>NTDB_id=534085 JRC48_RS05370 WP_235070823.1 1157172..1158935(-) (rcrQ) [Turicibacter sp. TJ11]
MNQTNEQKGSLIKLFHYCRKYLPLILIALIGASIGTVLTLFGPDKLSEMTDLITGGLFGSMDLEAIADIGWTLVIIYGVS
FILSLGQGLIMANITQRISKQLRTALSDKVNKLPMAYYNNTTTGDILSRVTNDIDTIGQTLNQSIGMLVTALCLFIGSLI
MMFKTNVIMSLTAILSILLGFVLMMLLMKTSQKYFLSQQESLGAINGHVEEVYSGHFIVKAYNGENQMREAFETINENLR
DSAYKAQFLSGLMMPMMMFIGNLGYVAVCIVGAVLAMNDKISFGVIVAFIMYIRYFTQPLAQMAQAAQSLQSASAASHRV
FEFLEAEEMEDERHKQQKLTSATGKVEFKNVQFSYSKHGKPVIKNFSTLAKPGQKIAIVGPTGAGKTTLVNLLMRFNEIN
GGDILIDDVSIHDLTRENIHDLFCMVLQDTWLFEGSIKENLIYNQDHITDEQVQQACQAVGLHHFIETLHDGYDTILNDK
VNLSAGQKQQLTIARAMLKQAPMLILDEATSSVDTRTELLIQQAMDQLMEGRTSFVIAHRLSTIKNADVILVLKDGDILE
SGNHEELLAKNGFYAELYNSQFEQAEE

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=534085 JRC48_RS05370 WP_235070823.1 1157172..1158935(-) (rcrQ) [Turicibacter sp. TJ11]
ATGAATCAAACAAACGAACAAAAAGGGAGTTTAATTAAGCTATTTCATTATTGTAGAAAATATCTTCCACTCATTTTAAT
CGCCTTAATCGGAGCTTCAATCGGAACGGTTCTAACGTTATTTGGACCGGATAAATTATCAGAAATGACCGATTTAATTA
CAGGTGGTTTATTTGGAAGTATGGATTTAGAGGCGATTGCCGATATTGGATGGACGTTAGTTATCATTTACGGTGTAAGT
TTTATTTTGTCATTAGGTCAAGGCTTAATTATGGCGAATATTACTCAACGTATTTCTAAACAGTTAAGAACAGCGTTATC
AGATAAAGTAAACAAGTTACCAATGGCTTATTATAATAACACGACAACAGGTGATATTTTATCGCGTGTGACAAATGATA
TTGATACGATCGGTCAAACGTTAAATCAAAGTATTGGAATGTTAGTTACGGCGCTGTGTTTATTTATCGGTTCATTGATC
ATGATGTTTAAAACAAATGTCATCATGTCACTCACAGCTATTTTATCGATTTTACTAGGATTCGTTTTAATGATGTTACT
CATGAAAACATCTCAAAAATATTTCTTAAGTCAACAAGAATCGTTAGGTGCGATTAATGGTCATGTTGAAGAAGTTTATA
GCGGTCATTTTATCGTTAAAGCTTATAACGGTGAAAATCAAATGCGTGAAGCCTTTGAAACCATTAATGAAAATTTACGA
GACAGCGCCTATAAAGCTCAGTTTTTATCTGGATTAATGATGCCAATGATGATGTTTATCGGAAACTTAGGTTATGTCGC
CGTTTGTATTGTTGGAGCTGTTTTAGCCATGAATGATAAGATCTCATTTGGAGTCATTGTGGCATTTATTATGTATATCC
GTTACTTTACTCAACCACTTGCTCAAATGGCGCAAGCTGCCCAAAGTTTACAATCAGCATCAGCGGCAAGTCATCGAGTA
TTTGAATTTTTAGAAGCAGAAGAGATGGAAGATGAACGTCATAAACAACAGAAGTTAACTTCTGCTACAGGAAAAGTTGA
ATTTAAAAACGTTCAATTCTCTTATTCAAAACACGGAAAACCTGTCATTAAAAACTTCTCAACACTTGCTAAACCGGGAC
AAAAAATTGCCATTGTTGGTCCAACAGGAGCAGGGAAAACAACGCTTGTTAATTTATTAATGCGATTTAATGAAATTAAC
GGGGGAGACATTTTAATTGATGATGTTTCGATTCATGACTTAACGCGTGAAAATATCCATGACTTATTCTGTATGGTATT
ACAAGATACGTGGTTATTTGAAGGAAGCATTAAGGAAAATTTAATTTATAATCAGGATCATATTACAGATGAACAAGTTC
AACAGGCTTGTCAGGCGGTTGGATTACATCATTTCATCGAAACGTTACACGATGGTTATGACACGATTTTAAATGATAAA
GTCAATTTATCAGCCGGTCAAAAACAACAGTTAACGATTGCACGTGCGATGTTAAAACAAGCACCGATGTTAATTTTAGA
TGAGGCGACAAGTTCAGTTGATACACGAACAGAACTACTAATTCAGCAAGCGATGGATCAACTCATGGAAGGGCGTACCT
CATTTGTGATTGCTCACCGTCTATCAACGATTAAAAATGCAGATGTGATCTTAGTCTTAAAAGATGGAGATATTTTAGAA
AGCGGAAATCATGAAGAATTACTAGCTAAAAACGGCTTCTACGCTGAACTTTATAATAGCCAATTTGAACAAGCAGAAGA
ATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(26-300)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.414

98.807

0.567